PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G10600.4
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 494aa    MW: 54210.1 Da    PI: 8.9813
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G10600.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR37.35.5e-12171209342
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                      k +C+Ck skClk+YCeCf++g++C   C+C++C+N+ ++
  OMERI08G10600.4 171 KTNCSCKYSKCLKLYCECFEKGRYCIG-CNCTNCCNNVNH 209
                      789************************.********9875 PP
2TCR47.73.2e-15252292141
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      k++kgC+Ck+++ClkkYCeCf+a ++Cse+C+C++CkN ++
  OMERI08G10600.4 252 KHTKGCKCKRTECLKKYCECFKASVFCSENCRCTGCKNYKS 292
                      589***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.4E-7169209IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.628170292IPR005172CRC domain
PfamPF036383.9E-8172206IPR005172CRC domain
SMARTSM011147.4E-16252293IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-11255290IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MEKPLQLCPG SVKIDFASAS YAGKADIAAT AAALSHALGP PRTPPCYQLP LAKVNSSLPL  60
WPPVICPSTF AQKRPMSLPS PPPAKKLQVQ QSSSMLPQDF PKLEVLPVEK PTKLQVRRSP  120
QHVSLALKQG SPKMERPLLP RPATFIDVML SSQKPSIEMW SETKDVTLTR KTNCSCKYSK  180
CLKLYCECFE KGRYCIGCNC TNCCNNVNHE NARQEAINVA LERNPAAFMP KVSNSTAHNC  240
ESKAAEGDIV GKHTKGCKCK RTECLKKYCE CFKASVFCSE NCRCTGCKNY KSNEDRISQK  300
NTVHAHHVQN PASSGMVGQS VIIFLAAEND SSLSLAASVS DHSINNNTSH SGMKENTKRK  360
KLNRVDSCLS STNHDREAIQ KEPAKQMCSL EKSSNEDSKA PDATPSTTEE NLVDIFKEQE  420
KRVLTNFRDY LCKLATCGKL QGNQDQTNNP SVLQQGGKHH SSGRLILART KIGNAGIGKL  480
MGQKSPLHND VDKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-2517429614127Protein lin-54 homolog
5fd3_B1e-2517429614127Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714930.0AK071493.1 Oryza sativa Japonica Group cDNA clone:J023097M11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650561.10.0protein tesmin/TSO1-like CXC 6 isoform X1
RefseqXP_015650562.10.0protein tesmin/TSO1-like CXC 6 isoform X1
RefseqXP_015650563.10.0protein tesmin/TSO1-like CXC 6 isoform X1
RefseqXP_025883352.10.0protein tesmin/TSO1-like CXC 6 isoform X1
TrEMBLA0A0E0EKX80.0A0A0E0EKX8_9ORYZ; Uncharacterized protein
STRINGOMERI08G10370.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.13e-39Tesmin/TSO1-like CXC domain-containing protein