PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G11390.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 313aa    MW: 33078.8 Da    PI: 6.6611
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G11390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.23e-27125185259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dDg++WrKYGqK++ g+++pr+YYrCt++   gC+++k+v+r+++d ++++++Y+geH+++
  OMERI08G11390.1 125 DDGHSWRKYGQKDILGAKHPRGYYRCTHRntqGCTATKQVQRTDDDASLFDVVYHGEHTCR 185
                      8***************************98889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-28119185IPR003657WRKY domain
PROSITE profilePS5081122.079119182IPR003657WRKY domain
SuperFamilySSF1182905.62E-25123185IPR003657WRKY domain
SMARTSM007741.1E-39124186IPR003657WRKY domain
PfamPF031061.1E-26125185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEGVVDGSGA QLVVAELVRV QGLLRQLEAH LSAPCSVELC RGLAAQIVAL TDRSIGIATR  60
SFAGAHFADT APPMPALTSC TPSPLSDGSD HQPFRTTNAK KRKTTARWTS QVRVSAAGGA  120
EGPADDGHSW RKYGQKDILG AKHPRGYYRC THRNTQGCTA TKQVQRTDDD ASLFDVVYHG  180
EHTCRPGAAA AAKRPHAQTL LQSLSASLTV NTDTNTQVTP LTPENRATAP PPQQQQQSMS  240
ASPVASDSYG LGGAGYGDWR CCDGDLQEVV SALATVTSAP DHAAMDAADF MSYCFDFDPA  300
VYGGIIGTPS FFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-22125185969OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116060.0AK111606.1 Oryza sativa Japonica Group cDNA clone:J013102P22, full insert sequence.
GenBankAY6769310.0AY676931.1 Oryza sativa (indica cultivar-group) transcription factor WRKY69 (WRKY69) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651040.10.0probable WRKY transcription factor 54
TrEMBLA0A0E0EL790.0A0A0E0EL79_9ORYZ; Uncharacterized protein
STRINGOMERI08G11180.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-26WRKY family protein