PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI08G12580.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 182aa MW: 19329.8 Da PI: 9.3748

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI08G12580.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	22	5.1e-07	32	118	43	105
TCP 43 kdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasnsssg..................kaaksaakskksqksaa 105 ++ k+ieWL++ +ai++l+++ ss++a +++++s++++s+s+ ++++++ sk+ q++a+ OMERI08G12580.1 32 QPIKAIEWLIRTVAAAIDALPSLdcsfvlpnaaSSPPA----DDAEVSTSETSKSSvlsltnapcdngdafaefLHCSNTNGSKPLQQQAT 118 5789*******************999999766544444....2223333332222245555666777777777733333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.0E-4	33	115	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MAHAAATTSH SWKITTIRVA VHGARRRSAR LQPIKAIEWL IRTVAAAIDA LPSLDCSFVL 60 PNAASSPPAD DAEVSTSETS KSSVLSLTNA PCDNGDAFAE FLHCSNTNGS KPLQQQATLA 120 YYAAAQSAHM AAPISFEMMA MPPHLAFSQE QQQHATVAAF NRGTLRTKPA ARSGAGRWRT 180 SG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP014968	1e-141	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBank	BX000457	1e-141	BX000457.2 Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025877606.1	3e-55	transcription factor PCF8
Swissprot	A2ZMR9	2e-57	PCF8_ORYSI; Transcription factor PCF8
TrEMBL	A0A0E0ELN4	1e-130	A0A0E0ELN4_9ORYZ; Uncharacterized protein
STRING	OMERI08G12300.1	1e-131	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11553	26	38