PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G13200.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 387aa    MW: 39927.9 Da    PI: 6.8948
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G13200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.37.9e-333793358
      ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                     +++Y+eClkNhAaslGghavDGCgEfmps+ ++ +++a+lkCaACgCHRnFHRr +e
  OMERI08G13200.1 37 AAVYRECLKNHAASLGGHAVDGCGEFMPSPAADaADPASLKCAACGCHRNFHRRLPE 93
                     578***************************99999******************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-20790IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.7E-283991IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.4184091IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.4E-304090IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF1014477.06E-6105115No hitNo description
Gene3DG3DSA:1.10.10.603.3E-28239305IPR009057Homeodomain-like
SuperFamilySSF466894.48E-16240304IPR009057Homeodomain-like
TIGRFAMsTIGR015651.7E-21246302IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEAVVGVKYR PVVFPNGGAA AAVGKSKATP ASAAAAAAVY RECLKNHAAS LGGHAVDGCG  60
EFMPSPAADA ADPASLKCAA CGCHRNFHRR LPEAPPSPPL LALPPPPPPP PPPPPQPQQH  120
LPRTAAVAVA VAPQLLHGSH QRREQSPETD RVRGPGHHHD DDAAADDDDS EDSEMSDYDD  180
DRSASPLQAP PPVLSPGYLP SATHMLLSLG SASAPAVAAS RPHAAAAAAM GPPPPPGVAT  240
SASASRKRFR TKFSPEQKQR MQALSERLGW RLQKRDEAVV DECCREIGVG KGVFKVWMHN  300
NKHNFLGGHS ARRSASASAA AAPLAPPPVL TDFSINGSST HAAADHAAAT ASGGGGGSPH  360
LVLELIWVCM DNDDDDVLVG VLGGVVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A6e-212463041775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648556.11e-134zinc-finger homeodomain protein 10 isoform X1
RefseqXP_025875847.11e-134zinc-finger homeodomain protein 10 isoform X2
SwissprotQ6Z5281e-135ZHD10_ORYSJ; Zinc-finger homeodomain protein 10
TrEMBLA0A0E0ELY60.0A0A0E0ELY6_9ORYZ; Uncharacterized protein
STRINGOMERI08G12920.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.14e-22homeobox protein 34