PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G13500.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 423aa    MW: 45867.2 Da    PI: 5.4895
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G13500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2361.7e-1155111256
              AP2   2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                       ++GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa+a++ a++k++g+
  OMERI08G13500.1  55 AFRGVTRHRWTGRFEAHLWDkNTWNEsQSKKGRQGAYDGEEAAARAYDLAALKYWGH 111
                      58******************77779888877777999999**************997 PP
2AP248.13e-15153204155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +g+W+A+I   +   g +k+ +lg++ t eeAa a++ a+ + +g
  OMERI08G13500.1 153 SKYRGVARHHHNGKWEARIGRvF---G-NKYLYLGTYATQEEAAVAYDIAAIEHRG 204
                      89****99**********99966...3.6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.96E-1454120IPR016177DNA-binding domain
SMARTSM003804.1E-2055124IPR001471AP2/ERF domain
PROSITE profilePS5103218.46555118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-1255119IPR001471AP2/ERF domain
PfamPF008478.3E-956111IPR001471AP2/ERF domain
PRINTSPR003676.5E-55667IPR001471AP2/ERF domain
PRINTSPR003676.5E-5100120IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-17153214IPR016177DNA-binding domain
PfamPF008476.9E-10153203IPR001471AP2/ERF domain
CDDcd000181.47E-22153214No hitNo description
PROSITE profilePS5103217.728154212IPR001471AP2/ERF domain
SMARTSM003803.8E-25154218IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-17154212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MAKRRSNGET AAASSDDSSS GVCGGGGGGE VEPRRRQKRP RRSGPRDCPS QRSSAFRGVT  60
RHRWTGRFEA HLWDKNTWNE SQSKKGRQGA YDGEEAAARA YDLAALKYWG HDTVLNFPLS  120
TYDEELKEME GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGKWEAR IGRVFGNKYL  180
YLGTYATQEE AAVAYDIAAI EHRGLNAVTN FDINLYIRWY HGSCRSSSAA AAAATAATID  240
DDGFAEAIAA AFRAVDEQPS SSPSPSPATT RQLQTADDDD DDDLVAQLPP QLRPLARAAS  300
TSPIGLLLRS PKFKEIIEQA AAAASSGSSS STDSPSFSSS SLSPSPLPSP SPSPPPMQQP  360
TVPNDQYNVD MSSVAAARCS FPDDVQTYFG LDDDGFGYPE VDTFLFGDLG AYAAPMFQFE  420
LDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067690.0AK106769.1 Oryza sativa Japonica Group cDNA clone:002-115-F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651011.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A0E0EM260.0A0A0E0EM26_9ORYZ; Uncharacterized protein
STRINGOMERI08G13210.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-89AP2 family protein