PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI08G14560.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 320aa MW: 35390.6 Da PI: 6.2036

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI08G14560.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.4	5.1e-20	30	114	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W + e+++L++a++e+++rlrrg+lk+++Weev++ + + ++++ +qC++k+e+l+kry+ + ++ s +pyf+++e OMERI08G14560.1 30 WAHMETMHLLDAYEERWTRLRRGQLKAQQWEEVAADVaarcaaSGAALRKTGTQCRHKLEKLRKRYRIEGARPVT------SLWPYFRRME 114 ***********************************999987777889*************988776664......68*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.5E-18	28	116	No hit	No description
SMART	SM00595	4.0E-5	37	121	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MAQEAAAAAA AAGEEGALPQ RRKSAPGQPW AHMETMHLLD AYEERWTRLR RGQLKAQQWE 60 EVAADVAARC AASGAALRKT GTQCRHKLEK LRKRYRIEGA RPVTSLWPYF RRMERLERGP 120 LPVSSAFPPP PPAASPPAAA SDEDDDDDDD EEEDDEEEEE VEEPIPRNNT RSINGILRDS 180 GGGGGFSGFA PRPPPQQPPP SFAMLSTAPP RKRVPYEAFQ AKAAMADKVK EEEPPPVATR 240 PGGGANEQLS AVLRDFGQGI MRLERRRMEM QWEIDRGWKE TEARHNRMLL DAQRHLHEAL 300 AAAPPPAKKA RREHGGGDGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005918	0.0	AP005918.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0419H09.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648379.1	1e-142	trihelix transcription factor ASIL2
TrEMBL	A0A0E0EMH0	0.0	A0A0E0EMH0_9ORYZ; Uncharacterized protein
STRING	OMERI08G14280.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10078	29	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	6e-19	Trihelix family protein