PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G14660.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1600aa    MW: 172274 Da    PI: 7.3889
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G14660.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0013696718123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C+k+F  +s +  H  +H
  OMERI08G14660.3 696 FECPVCNKTFEEQSRYFGHVGSH 718
                      89************999987665 PP
2zf-C2H211.10.001310821104123
                       EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2    1 ykCpdCgksFsrksnLkrHirtH 23  
                       ++Cp C+k+F  +s +  H  +H
  OMERI08G14660.3 1082 FECPVCNKTFEEQSRYFGHVGSH 1104
                       89************999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509829.841182256IPR001739Methyl-CpG DNA binding
SuperFamilySSF541712.35E-6186236IPR016177DNA-binding domain
PfamPF014295.1E-5192235IPR001739Methyl-CpG DNA binding
PROSITE profilePS5098210.023521594IPR001739Methyl-CpG DNA binding
SuperFamilySSF541711.37E-6525576IPR016177DNA-binding domain
Gene3DG3DSA:3.30.890.109.4E-4526575IPR001739Methyl-CpG DNA binding
PfamPF014294.2E-5531574IPR001739Methyl-CpG DNA binding
SMARTSM003550.41647670IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280649670IPR007087Zinc finger, C2H2
SMARTSM003550.023696718IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328696723IPR007087Zinc finger, C2H2
PROSITE patternPS000280698718IPR007087Zinc finger, C2H2
SMARTSM003550.4110331056IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028010351056IPR007087Zinc finger, C2H2
PROSITE profilePS501579.32810821109IPR007087Zinc finger, C2H2
SMARTSM003550.02310821104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028010841104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1600 aa     Download sequence    Send to blast
METEVFPVVD LRVLTQSDLD ELATASAHAV DPRSSCPDRA VFNESAGSRK QTFSRVRFVP  60
AAAAAAAAAA ASAAAAAKLP RGNDKEDSFI AYHLRRLFAP DDPSSPQTQT LALPAPPSPD  120
PDQLTTNSRG VSVDLVGLSR LADPYDAELG KRTAGMTTEE ELMGFISSLA GQWVSQRMRR  180
KLVDASFFGD HLPSGWRLQL GIKRKDRKAW VNCFSYVSPK GQSFATCQEV SAYLMSLLGT  240
ISSTVHPQPD ADATATCPPL LTKVTVHSPT QLRRRHLIPP ASDTVASHRS SDRRSGARHL  300
IPPASDTVAS HLRAPIAAAA VASPEQKPRV VGKAEGRGSM ETEVFPVVDL RVLTQSDLDE  360
LATASAHAVD PRSSCPDRAV FNESAGSRKQ TFSRVRFVPA AAAAAAAAAA SAAAAAKLPR  420
GNDKEDSFIA YHLRRLFAPD DPSSPQTQTL ALPAPPSPDP DQLTTNSRGV SVDLVGLSRL  480
ADPYDAELGK RTAGMTTEEE LMGFISSLAG QWVSQRMRRK LVDASFFGDH LPSGWRLQLG  540
IKRKDRKAWV NCFSYVSPKG QSFATCQEVS AYLMSLLGYP EFKTDNIEYG STQQHGLCAD  600
DGVNVLGVQH QIGTGMDSQS ILPVASITFS SHSRDQDETD ADDINSYECQ QCNLTFHGQS  660
AYAHHLITFH KMGSKRRKIN KVGKFGEPVI GKDGKFECPV CNKTFEEQSR YFGHVGSHAK  720
YHGLTPEAFL QTLSGKVGND SFAGLSCSIQ DLVGSPQLNE KTTASEARSQ HHNCSTKHGG  780
NSTRGIDLFN SNCQANFNGH NQTWCRPDEI PPTADAPSTW TYRNNVTNCA DRTVPRTAPQ  840
PNDHMDCRVS GFAEATNFND QAGRHQGFRP SSFGTTNHCQ GQIIDHAVAA SKHAEVNNSM  900
KSRDVNLNSR LNTISFPIAT ANNETSTALN DVNRSCITXV LSSPKGQSFA TCQEVSAYLM  960
SLLGYPEFKT DNIECGSTQQ HGLCADDGVN VLGVQHQIGT GMDSQSILPV ASITFSSHSR  1020
DQDETDADDI NSYECQQCNL TFHGQSAYAH HLITFHKMGS KRRKINKVGK FGEPVIGKDG  1080
KFECPVCNKT FEEQSRYFGH VGSHAKYHGL TPEAFLQTLS GKVGNDSFAG LSCSIQDLVG  1140
SPQLNEKTTA SEARSQHHNC STKHGGNSTR GIDLFNSNCQ ANFNGHNQTW CRPDEIPPTA  1200
DAPSTWTYRN NVTNCADRTV PRTAPQPNDH MDCRVSGFAE ATNFNDQAGR HQGFRPSSFG  1260
TTNHCQGQII DHAVAASKHA EVNNSMKSRD VNLNSRLNTI SFPIATANNE TSTALNDVNR  1320
SCITGKGFSG SFSNNDGAAS IVLPSSGFNN KIPSSLGVAD RSSVAARSFN AGYVNENGAS  1380
EANNIGNKNN TMVYQTSLAM RPVSPCDLQL GFSGQKQQIL PGYGELRPAA SGSPQLGGMA  1440
ANSSIPTRPS QPQFGSMART DALPTGPSQP GSLARPNFVP TGFSQFASRP PTSVPPADSS  1500
QFAGGMARQN IPTTSEPTLV LGYTPQMVNG PPAQLGWDLS LSRMVSEGML PVLCIWCNSQ  1560
FHHFGPIDAQ QSGSFGFICP ACKEKMSGNP NAPNNGPWQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0681310.0AK068131.1 Oryza sativa Japonica Group cDNA clone:J013130L03, full insert sequence.
GenBankAK0690970.0AK069097.1 Oryza sativa Japonica Group cDNA clone:J023004M17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650380.10.0uncharacterized protein LOC4345880 isoform X1
TrEMBLA0A0E0EMI30.0A0A0E0EMI3_9ORYZ; Uncharacterized protein
STRINGOMERI08G14370.10.0(Oryza meridionalis)