PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI08G14660.6

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 1171aa MW: 125610 Da PI: 6.942

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI08G14660.6	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00089	653	675	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F +s + H +H OMERI08G14660.6 653 FECPVCNKTFEEQSRYFGHVGSH 675 89************999987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50982	9.429	182	255	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	1.01E-6	186	237	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.890.10	8.1E-4	187	236	IPR001739	Methyl-CpG DNA binding
Pfam	PF01429	3.1E-5	192	235	IPR001739	Methyl-CpG DNA binding
PROSITE profile	PS50982	9.429	478	551	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	1.01E-6	482	533	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.890.10	8.1E-4	483	532	IPR001739	Methyl-CpG DNA binding
Pfam	PF01429	3.1E-5	488	531	IPR001739	Methyl-CpG DNA binding
SMART	SM00355	0.41	604	627	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	606	627	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.023	653	675	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.328	653	680	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	655	675	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1171 aa Download sequence Send to blast
METEVFPVVD LRVLTQSDLD ELATASAHAV DPRSSCPDRA VFNESAGSRK QTFSRVRFVP 60 AAAAAAAAAA ASAAAAAKLP RGNDKEDSFI AYHLRRLFAP DDPSSPQTQT LALPAPPSPD 120 PDQLTTNSRG VSVDLVGLSR LADPYDAELG KRTAGMTTEE ELMGFISSLA GQWVSQRMRR 180 KLVDASFFGD HLPSGWRLQL GIKRKDRKAW VNCFSYVSPK GQSFATCQEV SAYLMSLLGY 240 PEFKTDNIEC GSTQQHGLCA DDGVNTCSTI SSTVHPQPDA DATATCPPLL TKGRGSMETE 300 VFPVVDLRVL TQSDLDELAT ASAHAVDPRS SCPDRAVFNE SAGSRKQTFS RVRFVPAAAA 360 AAAAAAASAA AAAKLPRGND KEDSFIAYHL RRLFAPDDPS SPQTQTLALP APPSPDPDQL 420 TTNSRGVSVD LVGLSRLADP YDAELGKRTA GMTTEEELMG FISSLAGQWV SQRMRRKLVD 480 ASFFGDHLPS GWRLQLGIKR KDRKAWVNCF SYVSPKGQSF ATCQEVSAYL MSLLGYPEFK 540 TDNIECGSTQ QHGLCADDGV NVLGVQHQIG TGMDSQSILP VASITFSSHS RDQDETDADD 600 INSYECQQCN LTFHGQSAYA HHLITFHKMG SKRRKINKVG KFGEPVIGKD GKFECPVCNK 660 TFEEQSRYFG HVGSHAKYHG LTPEAFLQTL SGKVGNDSFA GLSCSIQDLV GSPQLNEKTT 720 ASEARSQHHN CSTKHGGNST RGIDLFNSNC QANFNGHNQT WCRPDEIPPT ADAPSTWTYR 780 NNVTNCADRT VPRTAPQPND HMDCRVSGFA EATNFNDQAG RHQGFRPSSF GTTNHCQGQI 840 IDHAVAASKH AEVNNSMKSR DVNLNSRLNT ISFPIATANN ETSTALNDVN RSCITGKGFS 900 GSFSNNDGAA SIVLPSSGFN NKIPSSLGVA DRSSVAARSF NAGYVNENGA SEANNIGNKN 960 NTMVYQTSLA MRPVSPCDLQ LGFSGQKQQI LPGYGELRPA ASGSPQLGGM AANSSIPTRP 1020 SQPQFGSMAR TDALPTGPSQ PGSLARPNFV PTGFSQFASR PPTSVPPADS SQFAGGMARQ 1080 NIPTTSEPTL VLGYTPQMVN GPPAQLGWDL SLSRMVSEGM LPVLCIWCNS QFHHFGPIDA 1140 QQSGSFGFIC PACKEKMSGN PNAPNNGPWQ P

Sequence ? help Back to Top

Protein Sequence Length: 1171 aa Download sequence Send to blast

METEVFPVVD LRVLTQSDLD ELATASAHAV DPRSSCPDRA VFNESAGSRK QTFSRVRFVP  60
AAAAAAAAAA ASAAAAAKLP RGNDKEDSFI AYHLRRLFAP DDPSSPQTQT LALPAPPSPD  120
PDQLTTNSRG VSVDLVGLSR LADPYDAELG KRTAGMTTEE ELMGFISSLA GQWVSQRMRR  180
KLVDASFFGD HLPSGWRLQL GIKRKDRKAW VNCFSYVSPK GQSFATCQEV SAYLMSLLGY  240
PEFKTDNIEC GSTQQHGLCA DDGVNTCSTI SSTVHPQPDA DATATCPPLL TKGRGSMETE  300
VFPVVDLRVL TQSDLDELAT ASAHAVDPRS SCPDRAVFNE SAGSRKQTFS RVRFVPAAAA  360
AAAAAAASAA AAAKLPRGND KEDSFIAYHL RRLFAPDDPS SPQTQTLALP APPSPDPDQL  420
TTNSRGVSVD LVGLSRLADP YDAELGKRTA GMTTEEELMG FISSLAGQWV SQRMRRKLVD  480
ASFFGDHLPS GWRLQLGIKR KDRKAWVNCF SYVSPKGQSF ATCQEVSAYL MSLLGYPEFK  540
TDNIECGSTQ QHGLCADDGV NVLGVQHQIG TGMDSQSILP VASITFSSHS RDQDETDADD  600
INSYECQQCN LTFHGQSAYA HHLITFHKMG SKRRKINKVG KFGEPVIGKD GKFECPVCNK  660
TFEEQSRYFG HVGSHAKYHG LTPEAFLQTL SGKVGNDSFA GLSCSIQDLV GSPQLNEKTT  720
ASEARSQHHN CSTKHGGNST RGIDLFNSNC QANFNGHNQT WCRPDEIPPT ADAPSTWTYR  780
NNVTNCADRT VPRTAPQPND HMDCRVSGFA EATNFNDQAG RHQGFRPSSF GTTNHCQGQI  840
IDHAVAASKH AEVNNSMKSR DVNLNSRLNT ISFPIATANN ETSTALNDVN RSCITGKGFS  900
GSFSNNDGAA SIVLPSSGFN NKIPSSLGVA DRSSVAARSF NAGYVNENGA SEANNIGNKN  960
NTMVYQTSLA MRPVSPCDLQ LGFSGQKQQI LPGYGELRPA ASGSPQLGGM AANSSIPTRP  1020
SQPQFGSMAR TDALPTGPSQ PGSLARPNFV PTGFSQFASR PPTSVPPADS SQFAGGMARQ  1080
NIPTTSEPTL VLGYTPQMVN GPPAQLGWDL SLSRMVSEGM LPVLCIWCNS QFHHFGPIDA  1140
QQSGSFGFIC PACKEKMSGN PNAPNNGPWQ P

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069097	0.0	AK069097.1 Oryza sativa Japonica Group cDNA clone:J023004M17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650380.1	0.0	uncharacterized protein LOC4345880 isoform X1
TrEMBL	A0A0E0EMI6	0.0	A0A0E0EMI6_9ORYZ; Uncharacterized protein
STRING	OS08T0485700-01	0.0	(Oryza sativa)