PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI08G15740.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 268aa MW: 27321.2 Da PI: 9.5385

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI08G15740.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.9	4.5e-38	17	74	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s OMERI08G15740.1 17 TLRCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 74 679***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	1	66	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	18	72	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.5E-32	18	72	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	20	56	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MSERARLARV PLPEPGTLRC PRCDSTNTKF CYFNNYSLSQ PRHFCKACRR YWTRGGALRN 60 VPVGGGCRRN TKRSTKKSSS SSSRQGGGAG NAAAAATSSS STTSTSTTAT TSSAAAAAAD 120 VIASMQAGGA LLPHHLIGGL PSSAAAAAAL EASLEGYHHH HHGHGHQLPF LQPPPFLQQG 180 LHGYHFADGD VAAGGALADG GFPRGVASGL LAQLASVKME EHGTNNGGGV GGGFIGAHEQ 240 YWHGGNGGGG WPAEFLSGFS SSSSGNVL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL731784	0.0	AL731784.3 Oryza sativa chromosome 12, . BAC OSJNBa0016C14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619417.1	1e-101	dof zinc finger protein DOF5.1 isoform X1
TrEMBL	A0A0E0EMY7	0.0	A0A0E0EMY7_9ORYZ; Uncharacterized protein
STRING	OMERI08G15390.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	2e-36	Dof family protein