PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI08G16450.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 441aa MW: 47390.8 Da PI: 6.4976

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI08G16450.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4e-05	264	283	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ OMERI08G16450.1 264 FSCPVCFKTFNRYNNMQMHM 283 89*****************9 PP
2	zf-C2H2	12.4	0.00046	350	370	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F k + ++H +++ OMERI08G16450.1 350 CRKCGKAFAVKGDWRTHEKNC 370 *****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.38	264	286	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.6E-6	264	283	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.64	264	291	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	266	286	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.78E-6	332	368	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.0E-5	335	368	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	82	348	368	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.621	348	368	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	374	397	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MEDPYTSFFK NPYYYYCTSA SSFPTAPAAA AAHLPPPLPP PYAALHPIAG GVGVGAHHHH 60 QYPPAAFFHP PPVHQHHQAP PSPPLREALP LLSLSPTPAR RGGVDAAADS DSDDDDDGDC 120 CYHHLQDHQE GPAGRSTTTP AAAAARAPLF ADLNCIPTCC DDDDDGGDPM DVEVAGTTAD 180 IDAAVALRIG LPAGGTEADL LSGLTGAGVE HEEEEEDCKV DGGGSGGDDE VVPLGFSSTP 240 IGKLNKGQYW IPTPSQILIG PTQFSCPVCF KTFNRYNNMQ MHMWGHGSQY RKGPESLRGV 300 QPTAMLRLPC YCCAAGCRNN IDHPRARPLK DFRTLQTHYK RKHGLKPFLC RKCGKAFAVK 360 GDWRTHEKNC GKLWYCLCGS EFKHKRSLKD HARAFGHAHT ALDADDDDGA VSDADHHSSS 420 SSYAVVRPSS SMAASSLQPP R

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MEDPYTSFFK NPYYYYCTSA SSFPTAPAAA AAHLPPPLPP PYAALHPIAG GVGVGAHHHH  60
QYPPAAFFHP PPVHQHHQAP PSPPLREALP LLSLSPTPAR RGGVDAAADS DSDDDDDGDC  120
CYHHLQDHQE GPAGRSTTTP AAAAARAPLF ADLNCIPTCC DDDDDGGDPM DVEVAGTTAD  180
IDAAVALRIG LPAGGTEADL LSGLTGAGVE HEEEEEDCKV DGGGSGGDDE VVPLGFSSTP  240
IGKLNKGQYW IPTPSQILIG PTQFSCPVCF KTFNRYNNMQ MHMWGHGSQY RKGPESLRGV  300
QPTAMLRLPC YCCAAGCRNN IDHPRARPLK DFRTLQTHYK RKHGLKPFLC RKCGKAFAVK  360
GDWRTHEKNC GKLWYCLCGS EFKHKRSLKD HARAFGHAHT ALDADDDDGA VSDADHHSSS  420
SSYAVVRPSS SMAASSLQPP R

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK287566	0.0	AK287566.1 Oryza sativa Japonica Group cDNA, clone: J065027L04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649538.1	0.0	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-112	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0E0EN75	0.0	A0A0E0EN75_9ORYZ; Uncharacterized protein
STRING	OMERI08G16170.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-108	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]