PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G18590.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 378aa    MW: 40384.5 Da    PI: 8.038
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G18590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.2e-07201223123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ Cgk F+r  nL+ H+r H
  OMERI08G18590.1 201 HYCQVCGKGFKRDANLRMHMRAH 223
                      68*******************99 PP
2zf-C2H211.90.00069289312123
                      EEETTTT.EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                      y+C+ Cg k+Fs  s+L++H + +
  OMERI08G18590.1 289 YVCNRCGrKHFSVLSDLRTHEKHC 312
                      9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.99E-6199226No hitNo description
PROSITE profilePS5015712.653201228IPR007087Zinc finger, C2H2
SMARTSM003550.0034201223IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.7E-7201230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280203223IPR007087Zinc finger, C2H2
SMARTSM00355120251284IPR015880Zinc finger, C2H2-like
SMARTSM0035535289315IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MIPGGGGGGG GGGGVHGGGG ISPYLVQSQH GRGGGVDGME MEEGGGYMGE QAQCHPLLYN  60
LSVLKDRVQQ LHPLVGLVVA HNAHAHGPLD VSAADAIIQE IVAAASSMMY AFQLLCDLGT  120
APTTAPPQET AVVVKNNDDH AGQMEDDHLM QQQWQQNGSR QHDYSSHAPP VFHGETAAGA  180
TSATDTIIEL DAAELLAKYT HYCQVCGKGF KRDANLRMHM RAHGDEYKSK AALSNPSKGG  240
DEMMAAAARK YSCPQEGCRW NRGHAKFQPL KSVICAKNHY KRSHCPKMYV CNRCGRKHFS  300
VLSDLRTHEK HCGNHRWLCS CGTSFSRKDK LIGHVSLFAG HQPVMPLDAP RAGKRQRSSS  360
ASVAGNIDDT TGIGMGAA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0632900.0AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence.
GenBankAP0045870.0AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBankAP0055440.0AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649514.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT244e-94STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A0E0EP390.0A0A0E0EP39_9ORYZ; Uncharacterized protein
STRINGOMERI08G18460.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-94C2H2 family protein