PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G18820.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 232aa    MW: 25177.1 Da    PI: 5.9998
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G18820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-1851101155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      + ++GVr++  +g+WvAeIr+p   + r +r +lg+f ta +Aa+a++ a+++l+g
  OMERI08G18820.1  51 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNTALDAARAYDSAARALYG 101
                      679****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.29752109IPR001471AP2/ERF domain
SMARTSM003809.6E-3052115IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1953108IPR016177DNA-binding domain
PRINTSPR003671.3E-95364IPR001471AP2/ERF domain
PfamPF008475.1E-1253101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-2953108IPR001471AP2/ERF domain
CDDcd000185.47E-2653101No hitNo description
PRINTSPR003671.3E-97591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEIGEGESCC GRRKQQQQQN ISSSKSRKCC PLRRSRKGCM KGKGGPENQR CPFRGVRQRT  60
WGKWVAEIRE PNRGARLWLG TFNTALDAAR AYDSAARALY GDCARLNLLL AAAAGTPPPA  120
AATPSVATPC STNDDSNNSS STTHQQQLTT MLQLDDDNYT LQQIQMASSS DQEDFETYVT  180
RLPKAEDFGL EGFQEVPLDV LDEAGGGISI WDLSICPADF MAAAATTTAK SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1553115669ATERF1
3gcc_A4e-1553115669ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651102.11e-140dehydration-responsive element-binding protein 2C
SwissprotQ84ZA11e-141DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLA0A0E0EP681e-171A0A0E0EP68_9ORYZ; Uncharacterized protein
STRINGOMERI08G18700.11e-172(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-29ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]