PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G00030.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 483aa    MW: 53685.4 Da    PI: 10.0884
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G00030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57330.88e-1075162397
           DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      fqr ws +De+++L ++   ++++gk       +++  ++++++ k  + + l +K+r + ++  ++ k+         +++hd+  ++ls+ +
  OMERI09G00030.1  75 FQRTWSPNDEVLILEAMAAHRQEHGKV--PTAAELFPVLNGRLDRKrLTYKKLADKLRTFMRRHGRDAKN------GPPTQAHDRRLYDLSRNV 160
                      9************************65..56789999999999865278899********9999998888......556899************ PP

           DUF573  96 Wg 97 
                      W 
  OMERI09G00030.1 161 WV 162
                      *6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.7E-1375161IPR007592Protein of unknown function DUF573
PfamPF030172.3E-16386440IPR004264Transposase, Tnp1/En/Spm-like
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MAPTLPVVPA HGEDKKKKKK KKPSQEEEAL PLPPPDRKRK RASEPVNSPE RAKKKKTATP  60
HEPPSAKQQN RPLPFQRTWS PNDEVLILEA MAAHRQEHGK VPTAAELFPV LNGRLDRKRL  120
TYKKLADKLR TFMRRHGRDA KNGPPTQAHD RRLYDLSRNV WVSQTQPPNL SANANSTIAG  180
GQPNQHDAMP TAGKAFDKMR DSYPNLTQAL LLLVGTDLEK ALTAIDETKA QALDLKVSNL  240
KKELSEAVME SATIQSTESS KIPCFPSTKL QPEFGAEIEK NFQLEHLDEM KGTQSQQMAD  300
SKQQQDKSSA KGIICESSES GLRSIVADNN ILCNTLQKEM VVQQKLSCGK TKEVTSKHRH  360
PQKLGELRRV TMHGQQEDTN NEGGKEVLLL STTRPHIPVA KATLQTSSGS KFVGGMPLGS  420
EWYQVFVNDV LKPEAPLLHP PGMKMAEALK SIIAWPCAQV TDKADFMSET KLYRFAHYKG  480
CGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11322DKKKKKKKKP
21521KKKKKKK
33855RKRASEPVNSPERAKKKK
44955ERAKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0723860.0AK072386.1 Oryza sativa Japonica Group cDNA clone:J023081P06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610933.10.0uncharacterized protein LOC4346364 isoform X1
TrEMBLA0A0E0EP930.0A0A0E0EP93_9ORYZ; Uncharacterized protein
STRINGOMERI09G00020.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139691113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-10DNA-binding storekeeper protein-related transcriptional regulator