PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G03020.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 226aa    MW: 25455.9 Da    PI: 6.5137
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G03020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.18e-12104150854
              AP2   8 wdkkrgr...WvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                      ++++ +r   W++eIrdp+    +  r++lg+f+tae+Aa+a++   ++++
  OMERI09G03020.1 104 RRRREKRsypWASEIRDPV----KgIRVWLGTFDTAEGAARAYDDEVRRIY 150
                      3333444889*******75....44*******************8777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.359100159IPR001471AP2/ERF domain
SMARTSM003801.0E-22103165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-22107160IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-14112161IPR016177DNA-binding domain
CDDcd000183.14E-18113158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MRRRVSSSSS SPARHHKARR SKRKLAVDED WEAAFREFLS RDDDDDDDHD HDGQFDGHHH  60
HVVLAPLVRS NNCVHGHEVV ASTVGGGASR RRRADDDDGE RRRRRRREKR SYPWASEIRD  120
PVKGIRVWLG TFDTAEGAAR AYDDEVRRIY GGNAKTNFPL SPPPSPPPPP AEQPAAERSP  180
STTPPTTTED SGDSRILIEC CSDDLMDSLL AAFDMTTGDI DMRFWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190106RRRADDDDGERRRRRRR
299107ERRRRRRRE
3100106RRRRRRR
4100107RRRRRRRE
5101109RRRRRREKR
6103108RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4294451e-158EU429445.1 Oryza nivara strain IRRI-IRGC-101524 submergence-1C mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651344.14e-75ethylene-responsive transcription factor 1-like
TrEMBLA0A0E0EQB11e-162A0A0E0EQB1_9ORYZ; Uncharacterized protein
STRINGOMERI09G02790.11e-107(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP179721010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.12e-17ERF family protein