PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G03030.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 262aa    MW: 28333.2 Da    PI: 4.4495
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G03030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19101149355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +grW++eIrdp+    + +r++lg+f+ta eAa+a++a +++++g
  OMERI09G03030.1 101 YRGVRQRP-WGRWASEIRDPV----KgARVWLGTFDTAVEAARAYDAEARRIHG 149
                      9*******.**********75....44*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.879100157IPR001471AP2/ERF domain
SMARTSM003801.6E-37100163IPR001471AP2/ERF domain
PfamPF008471.5E-11101148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-31101157IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-22101158IPR016177DNA-binding domain
CDDcd000183.04E-29101156No hitNo description
PRINTSPR003672.8E-11101112IPR001471AP2/ERF domain
PRINTSPR003672.8E-11123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MCGGALIPND YDKPPPPPPS ESSEWDATTK MTKKKKRGGG GDDDWEAAFR EFIAGDIDDD  60
DGGVSMFPSG AGTMETTTEV AAAAVVERPR RWRRVRRSYP YRGVRQRPWG RWASEIRDPV  120
KGARVWLGTF DTAVEAARAY DAEARRIHGQ KARTNFPPDE PPPAPPSQAP FCFLLDDDDD  180
GVARGNSTAS SAPDSVSASA TSTVSGERGD ELILLECCSD DVMDSLLAGF DVSSEPRSVL  240
VWSPNPSCPT PGSAPDRENW NG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-19101157663ATERF1
3gcc_A8e-19101157663ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4294430.0EU429443.1 Oryza nivara strain IRRI-IRGC-101524 submergence-1B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610635.14e-96ethylene-responsive transcription factor 1-like
TrEMBLA0A0E0EQB30.0A0A0E0EQB3_9ORYZ; Uncharacterized protein
STRINGOMERI09G02800.11e-171(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152001318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-17ERF family protein