PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G03330.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 462aa    MW: 50203.3 Da    PI: 7.2021
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G03330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS246.41.1e-75964612374
             GRAS   2 velLlecAeavssgdlelaqalLar..lsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                      ve+L+++A+  ++gd  +a+++Lar  ++ +   + ++ p+ R a y++ AL++ l++ +s++  + p  e ++++   +l+a+k fs++sP+l
  OMERI09G03330.1  96 VEQLVQAAKLTEAGDVLAARHILARpaINYRlpTAAAAPPLLRSALYLKDALRRALNSDSSST-PTPPLHEPHPHDLLLKLTAYKSFSDLSPLL 188
                      689*********************844555565556668******************944443.456777888889****************** PP

             GRAS  92 kfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefn 179
                       f+h+t+ qa+l++++ +  +++H +Dfdi+ G QW++L++ La R      l++T+++  +s+    +  +l+ +++ L+ fA+ l vpf+f 
  OMERI09G03330.1 189 HFAHFTCVQAVLDELAPSscSCIHLLDFDIGVGEQWASLMHDLAHRHP-GVALKVTALNVTASSshhhHPLQLQLIHDTLSTFAADLSVPFRFA 281
                      *************998776699************************64.47899999887665566678899********************** PP

             GRAS 180 vlvakrledleleeL.rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                      ++   +l++ +l  L +v    +a+aV+l +   r      +     ++vL+l+++l +++vv v++ +d+++ +F++++l+al+  ++l++sl
  OMERI09G03330.1 282 AF---NLDATDLTPLlAVAAaTDAIAVHLPVGSVRAT----A----VPSVLHLLRRLGARLVVSVDRGCDRGELPFAAHLLQALRSTVSLLESL 364
                      *7...5555555554255557**********999997....4....456********************************************* PP

             GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                      +a  +++s+ ++k+Er++++++i+++v ++         + + Wr+ l +aGF pv++s+ a++qa++ll+k +++g+r+e + gsl+l W++ 
  OMERI09G03330.1 365 DAM-GTNSDVAAKIERFWVQPKIQECVRAAVGG-----DKTAAWRATLASAGFVPVQVSSMAEAQAESLLKKLPVRGFRLERRGGSLFLHWQRG 452
                      998.99*********************988777.....6789**************************************************** PP

             GRAS 366 pLvsvSaWr 374
                      +L svSaWr
  OMERI09G03330.1 453 ELASVSAWR 461
                      ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.61669441IPR005202Transcription factor GRAS
PfamPF035143.9E-7396461IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MLREERRKAS SSITLTSPGL RPPTHAASTP PPPWLVDADH HDNTFLHWVI NDHHHPLLDL  60
DDVDVDYAKP APFFFADRGS SFPNPKPTSD DNTSTVEQLV QAAKLTEAGD VLAARHILAR  120
PAINYRLPTA AAAPPLLRSA LYLKDALRRA LNSDSSSTPT PPLHEPHPHD LLLKLTAYKS  180
FSDLSPLLHF AHFTCVQAVL DELAPSSCSC IHLLDFDIGV GEQWASLMHD LAHRHPGVAL  240
KVTALNVTAS SSHHHHPLQL QLIHDTLSTF AADLSVPFRF AAFNLDATDL TPLLAVAAAT  300
DAIAVHLPVG SVRATAVPSV LHLLRRLGAR LVVSVDRGCD RGELPFAAHL LQALRSTVSL  360
LESLDAMGTN SDVAAKIERF WVQPKIQECV RAAVGGDKTA AWRATLASAG FVPVQVSSMA  420
EAQAESLLKK LPVRGFRLER RGGSLFLHWQ RGELASVSAW RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2313246136375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186730.0AC118673.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0080O10, from chromosome 3, complete sequence.
GenBankAC1254110.0AC125411.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0079B22, from chromosome 3, complete sequence.
GenBankAF4858110.0AF485811.1 Oryza sativa BAC OSJNa0049F05, complete sequence.
GenBankAK1193240.0AK119324.1 Oryza sativa Japonica Group cDNA clone:001-131-A10, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629082.20.0scarecrow-like protein 6
TrEMBLA0A0E0EQE40.0A0A0E0EQE4_9ORYZ; Uncharacterized protein
STRINGOMERI09G03000.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.13e-61GRAS family protein