PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI09G03700.3

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 235aa MW: 25912.7 Da PI: 8.8046

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI09G03700.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.6	7.5e-30	33	83	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprlrWt +LHerFv+av+qLGG+ekAtPktil++m+vkgLtl h+kSHLQ OMERI09G03700.3 33 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQ 83 79************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-27	30	83	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.22E-13	33	86	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-21	33	84	IPR006447	Myb domain, plants
Pfam	PF00249	5.5E-7	35	83	IPR001005	SANT/Myb domain
Pfam	PF14379	5.4E-22	113	158	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MFPPGLIHHR PDGGEAGRAA GGGPSLVLTA DPKPRLRWTA DLHERFVDAV AQLGGPEKAT 60 PKTILRTMGV KGLTLFHLKS HLQYSYLSLI FLDQKYRLGK QSGKEASEQS KDEVKEALRA 120 QMEMQRRLHE QVEVQKHVQI RMEAYQKYID TLLEKACKIV SEQLASSGFS ISDNDLPELS 180 GGVMCGSADT LSSSIFHQLS VSPINLHSPE GKPTPSGIEG QMILQKSPEL KRKSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-17	33	83	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-17	33	83	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-17	33	83	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-17	33	83	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-17	33	83	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-17	33	83	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-17	33	83	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-17	33	83	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-17	33	83	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-17	33	83	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-17	33	83	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-17	33	83	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069336	0.0	AK069336.1 Oryza sativa Japonica Group cDNA clone:J023010K22, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611986.1	1e-145	protein PHR1-LIKE 2
Swissprot	Q94A57	1e-59	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A0E0EQI7	1e-172	A0A0E0EQI7_9ORYZ; Uncharacterized protein
STRING	OGLUM09G05270.1	1e-145	(Oryza glumipatula)
STRING	OMERI09G03370.1	1e-145	(Oryza meridionalis)
STRING	ORUFI09G05100.1	1e-145	(Oryza rufipogon)
STRING	ONIVA09G04720.1	1e-145	(Oryza nivara)
STRING	OBART09G04520.1	1e-145	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	9e-62	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]