 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OMERI09G06010.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
| Family | Trihelix | ||||||||
| Protein Properties | Length: 1380aa MW: 154901 Da PI: 5.9672 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 52.4 | 1.4e-16 | 39 | 128 | 1 | 70 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....................rergferspkqCkekwenlnkrykkikegekk 70
rW++qe++aLi++r+em++++ + k++lWe++s+ + g++rs+k+Ckek+e+++k yk +k
OMERI09G06010.1 39 RWSRQETQALIKIRSEMDDAFCGATIKGNLWEDISREQskkafcdvvcvqcsqsakalAGLGYRRSAKRCKEKFEKVHKIYKHTKSAGAP 128
8************************************99********************************************9976655 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF13837 | 1.3E-9 | 38 | 132 | No hit | No description |
| CDD | cd12203 | 1.49E-18 | 38 | 123 | No hit | No description |
| SuperFamily | SSF52540 | 4.39E-48 | 533 | 816 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 6.3E-7 | 566 | 700 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 5.7E-44 | 572 | 842 | IPR002182 | NB-ARC |
| PRINTS | PR00364 | 1.4E-10 | 577 | 592 | No hit | No description |
| PRINTS | PR00364 | 1.4E-10 | 652 | 666 | No hit | No description |
| PRINTS | PR00364 | 1.4E-10 | 752 | 766 | No hit | No description |
| SuperFamily | SSF52058 | 8.16E-34 | 900 | 1124 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 2.6E-17 | 908 | 1085 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 2.1E-16 | 1138 | 1373 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52058 | 8.16E-34 | 1173 | 1367 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| PRINTS | PR00364 | 1.4E-10 | 1232 | 1248 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1380 aa Download sequence Send to blast |
MDDKNQEGEP VPTTKPQERL SNKEEYATST EAGGGGSSRW SRQETQALIK IRSEMDDAFC 60 GATIKGNLWE DISREQSKKA FCDVVCVQCS QSAKALAGLG YRRSAKRCKE KFEKVHKIYK 120 HTKSAGAPRQ ESLKAPVVSS GCPVVAPSPS MASGAVELHH SQPMNLDNTS SFFPMSESAE 180 LESSRGCEED MMMITGEIGS KSNRSSGGGK ELTALFDGFM KQVVERQEEM QRRFLEALEK 240 REAERRAREE AERVAREEAW RRQEMARLNR EHEQQRAQDH AAIIAFLHRI GQPPPGVIST 300 AAAQPFPWPL QQELAHAPPF QQQPKHKETA QQDDAWASLS LHPSKSLTDE PSVLNYATPG 360 TVESTTSTST QHPIATPDSA QNTHDPTTFQ HSPSFVTWTP DEFLSPGFNS SKQDERFVLE 420 TTLRGMYELI KLAECWVHKD YSIANLLQEA KDTVYCAEDL LDELNYYELQ DGVGFNANRS 480 SCPEFSDIRM TEIHGKLNSL KEQMGHLGLH DMQPQHFILE SVSQKYGNLM YDRTNFGYQE 540 ELQVLIDSLI LDKNSPTSGQ VAEVPSSGRA GQKNLSVLTI VGDGGIGKTA LAHCSFNDQK 600 VQDHFDLLVW ICVSDGFDDK KLIKRLAWAI AESEMKSDDL ICLQRVLTNG VIHHSRRLLL 660 VLDDLQEDVC QEYYLGWERF LAPLKCASPG SMVLVTTRSM KVAEHISAVC LQLAGLPEEI 720 NWHLFSMHAF DLPISDSDQE VECIGRKIAA RLNGSPLGAK IVGCLLNLKL DAVYWKSMLE 780 SELWELGHHK ETRIWPALHL SYQYLPFHLK RCFSFCSMYP KSHEFDAETL VDSWVAVGLV 840 VSNGSMPAVD IGQEYFDQLV RRSFFQISPT SSSSRHAYVM QGLLYETAQK ISTNESFVIK 900 DSSDLLRIPP KVRHVSILHF SGLGSSDLES LHKYKTLRSV VCISIDSDVI TTSVLETWFC 960 HLTNIRMLRF ISCRLKELLG NVGNLILLRY LDISSCDIEA LPDSFWRLRN LEILDAQNCR 1020 FDGVPKDIVK LVKLRKVRLR SDLNNQLGHV PGVGNLIYLQ DMPYYAVDDT PGRGIQELKN 1080 LNNLRGALEI SGLHNVTSKE QAVEADLDKK IHLNTLTLSW HDSIRPDKHN GEQEMEMLEG 1140 LRPSPSIKNL ELRFYMGSGF HPSWLLDDEP ISSRLESLSI SSCPNIANLF ITETGSSSSS 1200 RGSSPVVFRS LTKLSITWCR KLMSLDNLLQ PELLPEIKVI RISNCEELAS LPTNQLIKFT 1260 HLEDLEVSHC WSLSWEQGLT LPSSLKSLKL EACGELTDSV LRCGLRELPV LVSLELQFCS 1320 GVECIGAEIW SGLPSLQRLK IFCCQELSSI GGGESIARVE SVDIRHCPKL RELEQPFQRG |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j5t_C | 8e-42 | 419 | 1251 | 34 | 832 | Disease resistance RPP13-like protein 4 |
| 6j5t_F | 8e-42 | 419 | 1251 | 34 | 832 | Disease resistance RPP13-like protein 4 |
| 6j5t_G | 8e-42 | 419 | 1251 | 34 | 832 | Disease resistance RPP13-like protein 4 |
| 6j5t_L | 8e-42 | 419 | 1251 | 34 | 832 | Disease resistance RPP13-like protein 4 |
| 6j5t_O | 8e-42 | 419 | 1251 | 34 | 832 | Disease resistance RPP13-like protein 4 |
| 6j5u_A | 8e-42 | 419 | 1251 | 34 | 832 | Disease resistance RPP13-like protein 4 |
| 6j5v_A | 8e-42 | 419 | 1251 | 34 | 832 | Disease resistance RPP13-like protein 4 |
| 6j5w_A | 8e-42 | 419 | 1251 | 34 | 832 | Disease resistance RPP13-like protein 4 |
| 6j6i_C | 8e-42 | 419 | 1251 | 34 | 832 | Disease resistance RPP13-like protein 4 |
| 6j6i_F | 8e-42 | 419 | 1251 | 34 | 832 | Disease resistance RPP13-like protein 4 |
| 6j6i_G | 8e-42 | 419 | 1251 | 34 | 832 | Disease resistance RPP13-like protein 4 |
| 6j6i_L | 8e-42 | 419 | 1251 | 34 | 832 | Disease resistance RPP13-like protein 4 |
| 6j6i_O | 8e-42 | 419 | 1251 | 34 | 832 | Disease resistance RPP13-like protein 4 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AP005422 | 0.0 | AP005422.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0441A12. | |||
| GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015612015.1 | 0.0 | putative disease resistance protein RGA3 | ||||
| TrEMBL | A0A0E0ERG7 | 0.0 | A0A0E0ERG7_9ORYZ; Uncharacterized protein | ||||
| STRING | OMERI09G05760.1 | 0.0 | (Oryza meridionalis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP14099 | 6 | 9 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G76890.2 | 2e-16 | Trihelix family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|