PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G07840.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 295aa    MW: 31962.6 Da    PI: 6.7318
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G07840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.86.8e-47281631128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL..pk.....kvkaeekew..yfFskrdkkyatgkrknratksgyWka 85 
                      lppGfrF+Ptd elv +yL++k+++  ++   +i+++d+y++ePwdL  p      ++++ee+e   yfF++r+ + ++g+r+nrat++gyWk+
  OMERI09G07840.1  28 LPPGFRFRPTDGELVAHYLARKAADAGFTS-AAIRDADLYRAEPWDLlpPPrcdaaAAEEEEEERcgYFFCTRSFRWPSGTRTNRATAAGYWKS 120
                      79*************************999.78**************64225776533333333358*************************** PP

              NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      tgkdk+vl+ +g  vg+kktLvfy+grap+gekt+Wvmheyrl
  OMERI09G07840.1 121 TGKDKAVLHGGGCPVGVKKTLVFYRGRAPRGEKTSWVMHEYRL 163
                      *********99******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-5218198IPR003441NAC domain
PROSITE profilePS5100550.85228198IPR003441NAC domain
PfamPF023653.3E-2729163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSARGGVTMG GDRASSSSSS TAMISRLLPP GFRFRPTDGE LVAHYLARKA ADAGFTSAAI  60
RDADLYRAEP WDLLPPPRCD AAAAEEEEEE RCGYFFCTRS FRWPSGTRTN RATAAGYWKS  120
TGKDKAVLHG GGCPVGVKKT LVFYRGRAPR GEKTSWVMHE YRLLHGGAAA TASSSPTPTT  180
TLAGVARSEW VICRVFVRKT PNGNNDRGTT ERHLPSNDNH LRSSPAPANS VDGAGHASCS  240
FFSGAHESMA PSDHFNIGDD VILHGHDEEE LLMMTNCSSF DLPELLDYES FSLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-412820017167NO APICAL MERISTEM PROTEIN
1ut4_B7e-412820017167NO APICAL MERISTEM PROTEIN
1ut7_A7e-412820017167NO APICAL MERISTEM PROTEIN
1ut7_B7e-412820017167NO APICAL MERISTEM PROTEIN
3swm_A8e-412820020170NAC domain-containing protein 19
3swm_B8e-412820020170NAC domain-containing protein 19
3swm_C8e-412820020170NAC domain-containing protein 19
3swm_D8e-412820020170NAC domain-containing protein 19
3swp_A8e-412820020170NAC domain-containing protein 19
3swp_B8e-412820020170NAC domain-containing protein 19
3swp_C8e-412820020170NAC domain-containing protein 19
3swp_D8e-412820020170NAC domain-containing protein 19
4dul_A7e-412820017167NAC domain-containing protein 19
4dul_B7e-412820017167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641911e-143AK064191.1 Oryza sativa Japonica Group cDNA clone:002-104-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611185.11e-174NAC domain-containing protein 79
SwissprotQ9SQQ62e-56NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A0E0ES460.0A0A0E0ES46_9ORYZ; Uncharacterized protein
STRINGOMERI09G07660.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153521618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.16e-55NAC domain containing protein 46
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]