PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G08780.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 136aa    MW: 14790.1 Da    PI: 7.4401
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G08780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-053456123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F ++  L  H++ H
  OMERI09G08780.1 34 FTCTYCDKKFYSSQALGGHQNAH 56
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.05E-72475No hitNo description
PROSITE profilePS5015711.3853461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MDRHNGCGGE EGDEQLDLNL SLQPSQANEP PGYFTCTYCD KKFYSSQALG GHQNAHKFER  60
SVAKRTRELA AARRQQAADE EARRGAGTTT TREPTGNASR GSAAGTSSSS YQRASPPAEA  120
RRRDLLTDDI DLSLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057471e-150AP005747.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0039E17.
GenBankAP0149651e-150AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126171e-150CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBankCT8358191e-150CT835819.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA017B14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611311.13e-69zinc finger protein 2
TrEMBLA0A0E0ESH49e-95A0A0E0ESH4_9ORYZ; Uncharacterized protein
STRINGOMERI09G08590.16e-95(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-14zinc finger protein 2