PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI09G09450.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 537aa MW: 59543.7 Da PI: 5.2274

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI09G09450.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	49.8	6.9e-16	203	253	3	52
RWP-RK 3 keisledlskyFslpikdAAke.LgvclTvLKriCRqyGIkRWPhRkiksl 52 k+++ +dl++yF+ + k+AA L +++T+LK CR + ++RWP+R+i+sl OMERI09G09450.1 203 KTMTKKDLESYFHITQKSAAHIgLSIGTTALKNLCRANDLPRWPYRQIASL 253 899***************84499*********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.22	183	273	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-16	204	253	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MATGGSSSSS NVPSGGAATG GGAGAGSGKL PMVPVGSIEC LRKRCRQLRV LIHVNDHRKA 60 VVVLHAGEDG KPDHVLVQNV SPEGEASVQS TYRIDVSGET PESQAEMLND WYTSFRMDTT 120 GVLYDSDQNV IYGVPRGYPG GDVPRSLAIL PPAPKKNQHG KASAMESNSS LVEEPLLLVQ 180 TNQTAAIGKR KKFTFPDQRK RVKTMTKKDL ESYFHITQKS AAHIGLSIGT TALKNLCRAN 240 DLPRWPYRQI ASLDNKFNNN LKKQITGWNL GKAVQGVTKA FKLRKEKEEF YQKIMSSMPE 300 QLQGIDQIVN SLPEADDDID IEDDEDNDDV IEDNNDDNSD ENYDGATAGG NAGSSMLLMV 360 PMGSIECLRK RCRQLRMLIH VNDHRKTVIV LHAGEDRKLD HVLVQNDSPD AEASEKPQSR 420 KLKCLMTGTL RSEWIQQESS TTPTRMIASL ENKFNNNLKK QITGWNLGKG VTQAFKLYKE 480 KEQFYQKKII SSMLEQLQGI DEIVHSLPEA DDGIDIEDDE DNDEVMEDND DKNSDEN

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MATGGSSSSS NVPSGGAATG GGAGAGSGKL PMVPVGSIEC LRKRCRQLRV LIHVNDHRKA  60
VVVLHAGEDG KPDHVLVQNV SPEGEASVQS TYRIDVSGET PESQAEMLND WYTSFRMDTT  120
GVLYDSDQNV IYGVPRGYPG GDVPRSLAIL PPAPKKNQHG KASAMESNSS LVEEPLLLVQ  180
TNQTAAIGKR KKFTFPDQRK RVKTMTKKDL ESYFHITQKS AAHIGLSIGT TALKNLCRAN  240
DLPRWPYRQI ASLDNKFNNN LKKQITGWNL GKAVQGVTKA FKLRKEKEEF YQKIMSSMPE  300
QLQGIDQIVN SLPEADDDID IEDDEDNDDV IEDNNDDNSD ENYDGATAGG NAGSSMLLMV  360
PMGSIECLRK RCRQLRMLIH VNDHRKTVIV LHAGEDRKLD HVLVQNDSPD AEASEKPQSR  420
KLKCLMTGTL RSEWIQQESS TTPTRMIASL ENKFNNNLKK QITGWNLGKG VTQAFKLYKE  480
KEQFYQKKII SSMLEQLQGI DEIVHSLPEA DDGIDIEDDE DNDEVMEDND DKNSDEN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012617	1e-150	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015696653.1	1e-160	PREDICTED: uncharacterized protein LOC107304984
TrEMBL	A0A0E0ESQ8	0.0	A0A0E0ESQ8_9ORYZ; Uncharacterized protein
STRING	OMERI09G09250.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15217	12	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-07	RWP-RK domain-containing protein