PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI09G11810.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 236aa MW: 25314.3 Da PI: 9.8571

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI09G11810.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	119.6	3e-37	8	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyat..gkrknratksgyWkatgkdke 91 lppGfrFhPtdeelvv+yL++++ +++l++ vi++v d ++PwdLp a++ e yfFs r+ ++a+ g ++r + sgyWkatg +k+ OMERI09G11810.1 8 LPPGFRFHPTDEELVVQYLRRRALSRPLPA-AVIPDVhDAAVLDPWDLP---GAGDGEAYFFSFRQLAAASggGGWRRRRAGSGYWKATGAEKP 97 79**************************.8999999*******...457889***999986324456666799******* PP NAM 92 vlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+ + +++lvg+k+tL f +++ p+ +t+Wvmheyrl OMERI09G11810.1 98 VFLRgfgcggGQHLVGVKTTLLFLRAKPPS--RTRWVMHEYRL 138 9999988888******666666..*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.98E-44	4	170	IPR003441	NAC domain
PROSITE profile	PS51005	45.199	8	170	IPR003441	NAC domain
Pfam	PF02365	2.9E-23	9	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MATPGQQLPP GFRFHPTDEE LVVQYLRRRA LSRPLPAAVI PDVHDAAVLD PWDLPGAGDG 60 EAYFFSFRQL AAASGGGGWR RRRAGSGYWK ATGAEKPVFL RGFGCGGGQH LVGVKTTLLF 120 LRAKPPSRTR WVMHEYRLAA AGAVAGQKKS GNHSCVAQPG EWVVCRIFLK NNGSSRRRAG 180 DADGETPVTG VHGHRRRQPS PSPSSSSCVT DEISDEEEEV SSGSINGAPS ASQREA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-31	7	172	14	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269\|PubMed:24243147}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK060509	0.0	AK060509.1 Oryza sativa Japonica Group cDNA clone:001-019-D01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015651404.1	1e-124	NAC domain-containing protein 83
Swissprot	O22798	8e-47	NAC41_ARATH; NAC domain-containing protein 41
TrEMBL	A0A0E0ETN7	1e-171	A0A0E0ETN7_9ORYZ; Uncharacterized protein
STRING	OMERI09G11680.1	1e-172	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12805	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.1	2e-35	NAC domain containing protein 41

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]