PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G12490.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 239aa    MW: 25577.3 Da    PI: 4.6731
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G12490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.5e-184999153
              AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53
                     + ++GVr++ + grWv+e+r+p   g +  r +lg+f+tae+Aa+a++aa++++
  OMERI09G12490.1 49 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTAEGAARAHDAAMLAI 99
                     579******************9...6445**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-1349100IPR001471AP2/ERF domain
PROSITE profilePS5103219.74450114IPR001471AP2/ERF domain
SMARTSM003807.2E-1450120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-2450116IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1550100IPR016177DNA-binding domain
CDDcd000184.67E-1751116No hitNo description
PRINTSPR003676.7E-55162IPR001471AP2/ERF domain
PRINTSPR003676.7E-57591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MCGIKQEMSG ESSGSPCSSA SAEQRHQTVW TAPPKRPAGR TKFRETRHPV FRGVRRRGNA  60
GRWVCEVRVP GRRGCRLWLG TFDTAEGAAR AHDAAMLAIN AGGGGGGACC LNFADSAWLL  120
AVPRSYRTLA DVRHAVAEAV EDFFRRRLAD DALSATSSSS TTPSTPRTDD EDDEESAATD  180
GDESSSPASD LAFELDVLSD MGWDLYYASL AQGMLMEPPS AALGDDGDAI LADVPLWSY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3009700.0AF300970.1 Oryza sativa DRE-binding protein 1A mRNA, complete cds.
GenBankAK2876920.0AK287692.1 Oryza sativa Japonica Group cDNA, clone: J065128G03, full insert sequence.
GenBankAP0068590.0AP006859.1 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa273B05.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankJQ8859560.0JQ885956.1 Oryza sativa isolate UR5 DRE-binding factor 1A (DREB1A) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610912.11e-142dehydration-responsive element-binding protein 1A
SwissprotA2Z3891e-143DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A
TrEMBLA0A0E0ETZ11e-172A0A0E0ETZ1_9ORYZ; Uncharacterized protein
STRINGOMERI09G12560.11e-173(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.14e-35C-repeat/DRE binding factor 2