PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G12670.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 452aa    MW: 47029.3 Da    PI: 4.9098
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G12670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.6e-35391292101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+++ed++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll+
  OMERI09G12670.1  39 FLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKRLLC 123
                      9*****************************************************************99.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+r+k
  OMERI09G12670.1 124 DIHRRK 129
                      ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.1E-3831123IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-5935128IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.97E-3536128IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.5E-3239128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-203962IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-2090102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MAEQGTGEAD AGGGEPPPPA VMTAAAEALA GQRSLPTPFL TKTYQLVEDP AVDDVISWNE  60
DGSTFVVWRP AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KIVPDRWEFA NDCFRRGEKR  120
LLCDIHRRKV VAAAAPPPPP SPGMATAAAA VASGAVTVAA APIPMALPVT RAGSPARSSE  180
EQVLSSNSGS GEEHRQASGS GSAPGAGAGG SASGGDMGEE NERLRRENAR LTRELGHMKK  240
LCNNILLLMS KYAATQHVEG SAGISSIANC SGESSEAVPP PPPLPPAILD LMPSCPALAT  300
AAAAAGLAID VEPDPSARLF GVSIGLKRTR DDAAAAADED GGGEDQAEHG ADVKPEAADP  360
HPAGDGGGSS TEASPESHPW PIYRPTPMYH AVRPTCNGPD RAGSDQDGSS SSQTMGLGDF  420
DGLQKTMVVQ QSNFVMHWGR SECGSGVRGF GW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-262912811120Heat shock factor protein 1
5hdg_A3e-263912810110Heat shock factor protein 1
5hdn_A3e-263912810110Heat shock factor protein 1
5hdn_B3e-263912810110Heat shock factor protein 1
5hdn_C3e-263912810110Heat shock factor protein 1
5hdn_D3e-263912810110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1065450.0AK106545.1 Oryza sativa Japonica Group cDNA clone:002-108-F03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612526.10.0heat stress transcription factor B-2c isoform X3
SwissprotQ652B00.0HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A0E0EU170.0A0A0E0EU17_9ORYZ; Uncharacterized protein
STRINGOMERI09G12730.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-59HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]