PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI09G12780.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 135aa MW: 15443.6 Da PI: 8.6989

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI09G12780.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.7	5.5e-20	28	80	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +f++eq++ Le++F+ + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k OMERI09G12780.1 28 KKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 80 456*************************************************9 PP
2	HD-ZIP_I/II	123.3	1.1e-39	27	115	2	90
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +k+r+s+eq+k+LE++F +++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal + e+L+ke+ +L ++ OMERI09G12780.1 27 RKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKLALIKQ 115 8***********************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.5E-19	12	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.103	22	82	IPR001356	Homeobox domain
SMART	SM00389	1.8E-16	25	86	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.2E-20	26	89	IPR009057	Homeodomain-like
CDD	cd00086	1.30E-14	27	83	No hit	No description
Pfam	PF00046	2.4E-17	28	80	IPR001356	Homeobox domain
PRINTS	PR00031	3.4E-6	53	62	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	57	80	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.4E-6	62	78	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.0E-11	82	116	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MDGEEDSEWM MMDVGGKGGG GGGAADRKKR FSEEQIKSLE SMFATQTKLE PRQKLQLARE 60 LGLQPRQVAI WFQNKRARWK SKQLEREYSA LRDDYDALLC SYESLKKEKL ALIKQARTSS 120 SILDRFLAFC IDSDA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	22	GGKGGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00650	PBM	Transfer from LOC_Os09g35910	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005681	0.0	AP005681.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1439_F07.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612316.1	2e-65	homeobox-leucine zipper protein HOX6
Swissprot	Q651Z5	2e-66	HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
Swissprot	Q9XH35	2e-66	HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBL	A0A0E0EU30	1e-92	A0A0E0EU30_9ORYZ; Uncharacterized protein
STRING	OMERI09G12830.1	2e-93	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7873	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	8e-42	homeobox 7

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]