PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI09G12960.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SRS

Protein Properties

Length: 322aa MW: 32479 Da PI: 8.754

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI09G12960.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	227.2	3.1e-70	94	245	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssae 95 g++sCqdCGnqakkdC+h+RCRtCCksrgf CathvkstWvpaakrrerqqqlaa++++aaa+a a a + r+ +++ +++ ++++ ++ss++ OMERI09G12960.1 94 GGGISCQDCGNQAKKDCTHMRCRTCCKSRGFACATHVKSTWVPAAKRRERQQQLAALAASAAATAgAGAGPSRDPTKRPRARPSATTPTTSSGD 187 5789**************************************************9999988876444455555556788888899999 PP DUF702 96 skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +++ + ++++P+evsseavfrcvr++ vd++e+e+aYqtavsigGhvfkGiL+d G+e OMERI09G12960.1 188 QQMVTVAERFPREVSSEAVFRCVRLGPVDQAEAEVAYQTAVSIGGHVFKGILHDVGPE 245 ******************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.1E-65	96	245	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.5E-27	98	140	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.2E-22	196	244	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MAGFPLGGGS HSRDNPAPPV PPVHPADAAS FLYATRGGSF QLWQQQEQQP FYASNIIRFA 60 DDAPPAPSLA GASSSSSSRG MRSSGGGGGG GGGGGGISCQ DCGNQAKKDC THMRCRTCCK 120 SRGFACATHV KSTWVPAAKR RERQQQLAAL AASAAATAGA GAGPSRDPTK RPRARPSATT 180 PTTSSGDQQM VTVAERFPRE VSSEAVFRCV RLGPVDQAEA EVAYQTAVSI GGHVFKGILH 240 DVGPEALAVA GGGSGGAGAS EYHFRLTGDG SSPSTAAAGE AGSGGGGNII VSSAVVMDPY 300 PTPGPYGAFP AGTPFFHGHP RP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241285	0.0	AK241285.1 Oryza sativa Japonica Group cDNA, clone: J065137A19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611315.1	1e-156	protein SHI RELATED SEQUENCE 1
Swissprot	Q9SD40	1e-54	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A0E0EU54	0.0	A0A0E0EU54_9ORYZ; Uncharacterized protein
STRING	OMERI09G13030.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	2e-38	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]