PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G13330.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 439aa    MW: 46234.1 Da    PI: 9.0865
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G13330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573101.29e-32190287298
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                      +++r+ws+ De+v+L+Gli++++k+ +   +++di ++++++++++s+kvs++ql++K+rrLK+K+++  ++ak+g+e +f ++hd++i++l+k
  OMERI09G13330.1 190 RPSRVWSQADELVILRGLITYRTKRRVlpGSTQDIGKLHSYIRGQLSAKVSTTQLSDKVRRLKQKYQMLATRAKTGRE-QFPTPHDHNIYQLAK 282
                      678***********************9888899***************************************999999.9************** PP

           DUF573  94 kiWgs 98 
                      k+Wg+
  OMERI09G13330.1 283 KVWGT 287
                      ***95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.4E-27192286IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MAPKRPAEEA DAAAAAAAVA GGSASEGSDA EASAEAARGH GSSPSPSKTP PPANPNPKSA  60
AAPPSAAAPA SAAGSDSGAA SDSPRAAGNP SGPRSIEVNS DSEDSALPVA SDAYADQAAA  120
AGAGAGADSD DGNASPLPPP RPSRAEAAAI KPISSRPMDP PPRRSAGGSE PRAKRPRSAA  180
VASSAEHSKR PSRVWSQADE LVILRGLITY RTKRRVLPGS TQDIGKLHSY IRGQLSAKVS  240
TTQLSDKVRR LKQKYQMLAT RAKTGREQFP TPHDHNIYQL AKKVWGTMST AGEGGGSGYD  300
NADAGESEEE QYGRESDDDM ENGRDNRHRK NQRSVPVTIA NGNGTGISAV NATARGRSEF  360
EKGKDVYPYL WETVEELSSQ HPTGAVFKKA FELLEGSKAQ VMEEKLRKFR LTEMRQQLRR  420
MDLMKDTLSM VLDALEMAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053930.0AP005393.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0488D02.
GenBankAP0055590.0AP005559.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1163_C07.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611802.10.0STOREKEEPER protein
TrEMBLA0A0E0EUB50.0A0A0E0EUB5_9ORYZ; Uncharacterized protein
STRINGOMERI09G13450.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.21e-14DNA-binding storekeeper protein-related transcriptional regulator