PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G14420.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 535aa    MW: 55113.4 Da    PI: 9.5117
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G14420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-0579101123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F r  nL+ H r H
  OMERI09G14420.1  79 FVCEVCNKGFQREQNLQLHRRGH 101
                      89*******************88 PP
2zf-C2H212.50.00043155177123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C +C+k++  +s+ k H +t+
  OMERI09G14420.1 155 WRCDKCSKRYAVQSDWKAHSKTC 177
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.9E-778101No hitNo description
Gene3DG3DSA:3.30.160.607.3E-678101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.09479101IPR007087Zinc finger, C2H2
PfamPF121713.4E-579101IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.004179101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-4143176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.9E-7150175No hitNo description
SMARTSM00355150155175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MAAASSAPLF GLGDTQMPPP QNPTNPALHH HPNPSPAPVV AAAAPAPKKK RNQPGNPSKY  60
PDAEVIALSP RTLMATNRFV CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK NPKEARRRVY  120
LCPEPSCVHH DPSRALGDLT GIKKHYCRKH GEKKWRCDKC SKRYAVQSDW KAHSKTCGTR  180
EYRCDCGTLF SRRDSFITHR AFCDALAQEN ARMPPIGAGV YGGAGNMTLG LTGMAAPQLP  240
AGFTDQAGQA PSASAGDVLR LGGGSNGASQ FDHLMASSSG SSMFRSQGSS SSSFYLANAA  300
SHHAPAQDFG PEDGQSQAGQ GSLLHGKPAA FHDLMQLPVQ HQQSSNGNLL NLGFFSGSNG  360
GVDQFNGGAG NGGQGSIVTS SGLAGNHGGG GGGFPSLYNS SEPAGTLPQM SATALLQKAA  420
QMGATTSSYN AGGSSLLRGA SSHGITAGEG PANERSSYQN LIMGSMASGG GGAGFAGSFS  480
GASGFGGAVD DGKLSTRDFL GVGVVQGISG SPAMGPPRHG AAGLHVGSLD PANMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35151213365Zinc finger protein JACKDAW
5b3h_F2e-35151213365Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1011810.0AK101181.1 Oryza sativa Japonica Group cDNA clone:J033029F02, full insert sequence.
GenBankAK1019500.0AK101950.1 Oryza sativa Japonica Group cDNA clone:J033075E02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612461.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_015612462.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_015612463.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_015612465.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_015612466.10.0protein indeterminate-domain 5, chloroplastic
SwissprotQ9ZUL31e-120IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A0E0EUR80.0A0A0E0EUR8_9ORYZ; Uncharacterized protein
STRINGOMERI09G14530.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-112indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]