PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G14610.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 341aa    MW: 36783.5 Da    PI: 6.9496
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G14610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.46.8e-1225130186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................rergferspkqCkekwenlnkrykkikegekkr...tse 74 
                      +W+++ +  L+ea++ ++   +r+klk  +W +++  +                       ++p+qCk+k+e+++kry+++ + + +    +++
  OMERI09G14610.1  25 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVsahcamenaaaaaatgkPGSSTAKTPNQCKNKIESMKKRYRAESAAAARAgpaAAG 118
                      5*******************************9999999999**********9977778899******************99888776332466 PP

         trihelix  75 ssstcpyfdqle 86 
                      +  ++++f +++
  OMERI09G14610.1 119 AGPSWRFFARMD 130
                      678999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-1323131No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDALPDAADA APLAAAAAPP QKRDEWSESG IVRLLEAYEA KWLLRNRAKL KWSDWVDIAH  60
EVSAHCAMEN AAAAAATGKP GSSTAKTPNQ CKNKIESMKK RYRAESAAAA RAGPAAAGAG  120
PSWRFFARMD GLLKGPAGSG QPQAELSNII DLRAPPPPPA KVEVDVDADF VNQLADAGPG  180
ALSELVNAYA NGSIQEKLDK VENSGQVEGK AAESDVNVSS PRIKEVNEDA EEVDKVWDMS  240
KKRKNTEFDI AKSIELLASS FLKIERARMD LYRETERMRV EAEIKKGEME LKRTEIMAKT  300
HLQIAKLFAK RLKECSSKTG GSSSVTAEVD NHAKKGENGS G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612002.10.0trihelix transcription factor ASIL1
TrEMBLA0A0E0EUV50.0A0A0E0EUV5_9ORYZ; Uncharacterized protein
STRINGOMERI09G14760.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-47sequence-specific DNA binding transcription factors