PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G00690.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BBR-BPC
Protein Properties Length: 242aa    MW: 27040.4 Da    PI: 10.8667
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G00690.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind290.47.3e-89123765296
        GAGA_bind  65 kalae.rnkalverdnkllalllvensla...salpvgvqvlsgtksidslqqlse..pqledsave.lreeeklealpieeaaeeakekkkkk 151
                      ++++  +++++++r+ k+l+ l v ++     + +pvg+++++ t+++ +lq++ e  pql++++ +  ++ee+++ + +ee++    + + +k
  OMERI10G00690.3   1 MWMHMqQQHHHHPREPKVLHTLSVGHGGHiahHDHPVGYGMMPATHTLRMLQHQPEpqPQLQHPPSPpHPKEECISPPLMEENV--PVKPPPPK 92 
                      5898725667789***********99988887889**************99997666799*99999978999999888877755..56788999 PP

        GAGA_bind 152 krqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPL 244
                      krq++++pk+++ kk+kk +++++++ +++sa+ +r++ ++k+i++v+ng++lD s++P+ +CsCtGa++qCY+WG+GGWqSaCCttt+S+yPL
  OMERI10G00690.3  93 KRQQGRQPKVPRPKKPKK-PAAPREDGAPPSAPaPRRRGPRKNIGMVINGIDLDLSRIPTRICSCTGAPQQCYRWGAGGWQSACCTTTVSTYPL 185
                      99****************.9999********999************************************************************ PP

        GAGA_bind 245 PvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnk 296
                       +s krrgaRiagrKmS+gafkk+LekLa+e y+l+np+DLk++WAkHGtnk
  OMERI10G00690.3 186 LMSMKRRGARIAGRKMSHGAFKKVLEKLASEVYNLNNPIDLKTFWAKHGTNK 237
                      ***************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.2E-1091237IPR010409GAGA-binding transcriptional activator
PfamPF062173.0E-925237IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MWMHMQQQHH HHPREPKVLH TLSVGHGGHI AHHDHPVGYG MMPATHTLRM LQHQPEPQPQ  60
LQHPPSPPHP KEECISPPLM EENVPVKPPP PKKRQQGRQP KVPRPKKPKK PAAPREDGAP  120
PSAPAPRRRG PRKNIGMVIN GIDLDLSRIP TRICSCTGAP QQCYRWGAGG WQSACCTTTV  180
STYPLLMSMK RRGARIAGRK MSHGAFKKVL EKLASEVYNL NNPIDLKTFW AKHGTNKESG  240
AI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0788910.0AC078891.2 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0092N12, complete sequence.
GenBankAC1451270.0AC145127.1 Oryza sativa Japonica Group chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankAY5705200.0AY570520.1 Oryza sativa (japonica cultivar-group) barley B recombinant like protein C gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612725.11e-122barley B recombinant-like protein A isoform X1
RefseqXP_015612727.11e-122barley B recombinant-like protein A isoform X1
RefseqXP_015612730.11e-122barley B recombinant-like protein B isoform X1
RefseqXP_015612731.11e-122barley B recombinant-like protein B isoform X1
SwissprotP0DH881e-123BBRA_ORYSJ; Barley B recombinant-like protein A
SwissprotP0DH891e-123BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBLA0A0E0EVC41e-177A0A0E0EVC4_9ORYZ; Uncharacterized protein
STRINGOMERI10G00650.11e-174(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-53basic pentacysteine 2
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]