PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G05450.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 476aa    MW: 52455.5 Da    PI: 6.508
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G05450.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS174.11e-531463091165
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++++++c +av+++d +l + l+++l +++s +gdp+qRl ay++e+L arl++s+s++yk+l+++e +   sse +++++l++e++P++kf+
  OMERI10G05450.2 146 LKQVIIACGKAVAENDVRLKELLISELGQMVSVSGDPLQRLGAYMLEGLVARLSSSGSKIYKSLKCKEPT---SSELMSYMHLLYEICPFFKFG 236
                      57899****************************************************************9...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerL 165
                      ++ aN aI ea++ge+ vHiiDf+i qG QW++L+qaLa+Rp+gpp lRiTg+++++s   +   l  +g rL
  OMERI10G05450.2 237 YMSANGAIAEAIKGENFVHIIDFQIAQGSQWMTLIQALAARPGGPPFLRITGIDDSNSAyaRGGGLDIVGMRL 309
                      *******************************************************887777777788887777 PP
2GRAS171.47.1e-53310452230373
             GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                      +vkslsPk+v++veqe+++n+ +F+ r le+l+yy+a+f+s+++ lpr+++ r++ E+++++r+ivn++acegaer+erhe ++kW++rl++aG
  OMERI10G05450.2 310 MVKSLSPKLVTLVEQESNTNTRPFFPRYLETLDYYTAMFESIDVALPRDDKRRMSAEQHCVARDIVNLIACEGAERVERHEVFGKWKARLTMAG 403
                      79******************************************************************************************** PP

             GRAS 324 FkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      F+p+pls+ +++++k+ll++++s  yr+ee++g l+lgWk+r Lv+ SaW
  OMERI10G05450.2 404 FRPYPLSSVVNSTIKTLLHTYNSF-YRLEERDGVLYLGWKNRVLVVSSAW 452
                      **********************65.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.9120434IPR005202Transcription factor GRAS
PfamPF035143.6E-51146309IPR005202Transcription factor GRAS
PfamPF035142.5E-50310452IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MRGGNGRFYI TQNHQDAHYA SSDDGSQKIG SSPQAFEAPY CTLESSSANG AHPAHSSASS  60
HSISPISGSP LSHHDSHSDH TYNSPPSASC VTEITDLQIK LRELENAILG PELDIAYDSP  120
ESALQPNIMA TPENWRQLLG INTGDLKQVI IACGKAVAEN DVRLKELLIS ELGQMVSVSG  180
DPLQRLGAYM LEGLVARLSS SGSKIYKSLK CKEPTSSELM SYMHLLYEIC PFFKFGYMSA  240
NGAIAEAIKG ENFVHIIDFQ IAQGSQWMTL IQALAARPGG PPFLRITGID DSNSAYARGG  300
GLDIVGMRLM VKSLSPKLVT LVEQESNTNT RPFFPRYLET LDYYTAMFES IDVALPRDDK  360
RRMSAEQHCV ARDIVNLIAC EGAERVERHE VFGKWKARLT MAGFRPYPLS SVVNSTIKTL  420
LHTYNSFYRL EERDGVLYLG WKNRVLVVSS AWSHHVSISS LQVQDVMRAL LCSGVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4115345326379Protein SCARECROW
5b3h_A1e-4115345325378Protein SCARECROW
5b3h_D1e-4115345325378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1133350.0AC113335.1 Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1003C07, from chromosome 10, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661722.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_015697462.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG11e-112CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A0E0EX360.0A0A0E0EX36_9ORYZ; Uncharacterized protein
STRINGOB10G15940.10.0(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.11e-102SCARECROW-like 21
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]