PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G05450.5
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 561aa    MW: 62134.2 Da    PI: 6.2593
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G05450.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS432.24e-1321915601373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++++++c +av+++d +l + l+++l +++s +gdp+qRl ay++e+L arl++s+s++yk+l+++e +   sse +++++l++e++P++kf+
  OMERI10G05450.5 191 LKQVIIACGKAVAENDVRLKELLISELGQMVSVSGDPLQRLGAYMLEGLVARLSSSGSKIYKSLKCKEPT---SSELMSYMHLLYEICPFFKFG 281
                      57899****************************************************************9...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++ aN aI ea++ge+ vHiiDf+i qG QW++L+qaLa+Rp+gpp lRiTg+++++s   +   l  +g rL k+A+++g+pfefn+ v  + 
  OMERI10G05450.5 282 YMSANGAIAEAIKGENFVHIIDFQIAQGSQWMTLIQALAARPGGPPFLRITGIDDSNSAyaRGGGLDIVGMRLYKVAQSFGLPFEFNA-VPAAS 374
                      *******************************************************988899999************************.79999 PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      +++ le+L+++ gE+++Vn+++qlh+++desvs+e++rd++L++vkslsPk+v++veqe+++n+ +F+ r le+l+yy+a+f+s+++ lpr+++
  OMERI10G05450.5 375 HEVYLEHLDIRVGEVIVVNFAYQLHHTPDESVSTENHRDRILRMVKSLSPKLVTLVEQESNTNTRPFFPRYLETLDYYTAMFESIDVALPRDDK 468
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       r++ E+++++r+ivn++acegaer+erhe ++kW++rl++aGF+p+pls+ +++++k+ll++++s  yr+ee++g l+lgWk+r Lv+ SaW
  OMERI10G05450.5 469 RRMSAEQHCVARDIVNLIACEGAERVERHEVFGKWKARLTMAGFRPYPLSSVVNSTIKTLLHTYNSF-YRLEERDGVLYLGWKNRVLVVSSAW 560
                      *****************************************************************65.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.37165542IPR005202Transcription factor GRAS
PfamPF035141.4E-129191560IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MVKDGRINSL LSTIPQDFTS MSARASNHAY ICSDDSQMPY YNNSVPSGGN GRFYITQNHQ  60
DAHYASSDDG SQKIGSSPQA FEAPYCTLES SSANGAHPAH SSASSHSISP ISGSPLSHHD  120
SHSDHTYNSP PSASCVTEIT DLQIKLRELE NAILGPELDI AYDSPESALQ PNIMATPENW  180
RQLLGINTGD LKQVIIACGK AVAENDVRLK ELLISELGQM VSVSGDPLQR LGAYMLEGLV  240
ARLSSSGSKI YKSLKCKEPT SSELMSYMHL LYEICPFFKF GYMSANGAIA EAIKGENFVH  300
IIDFQIAQGS QWMTLIQALA ARPGGPPFLR ITGIDDSNSA YARGGGLDIV GMRLYKVAQS  360
FGLPFEFNAV PAASHEVYLE HLDIRVGEVI VVNFAYQLHH TPDESVSTEN HRDRILRMVK  420
SLSPKLVTLV EQESNTNTRP FFPRYLETLD YYTAMFESID VALPRDDKRR MSAEQHCVAR  480
DIVNLIACEG AERVERHEVF GKWKARLTMA GFRPYPLSSV VNSTIKTLLH TYNSFYRLEE  540
RDGVLYLGWK NRVLVVSSAW C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-571935606374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1133350.0AC113335.1 Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1003C07, from chromosome 10, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614551.10.0scarecrow-like protein 21
RefseqXP_015614552.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A0E0EX390.0A0A0E0EX39_9ORYZ; Uncharacterized protein
STRINGOGLUM10G07400.40.0(Oryza glumipatula)
STRINGORUFI10G08100.40.0(Oryza rufipogon)
STRINGOBART10G07700.20.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]