PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G06140.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 155aa    MW: 17240.8 Da    PI: 10.6212
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G06140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM22.62.9e-074289147
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdL 47
                     +p+Gf F P+d el   +++k v+gk   + +  +++++i++++P  L
  OMERI10G06140.1 42 MPVGFYFVPKDLELFAIFMCKLVRGKVPGALNNiFEHIRILEFHPALL 89
                     699***********************976655538899*******987 PP
2NAM36.81.2e-119214480127
              NAM  80 sgyWkatgkdkevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                       g+Wka+g +k+v sk  +g  vg k t+vfy    + +++++kt+W mhe++
  OMERI10G06140.1  92 GGTWKASGGSKTVRSKkvGGIIVGQKLTMVFYerrFEGDQNPVKTNWGMHEFT 144
                      79************99888889**********44313466779********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100510.8461155IPR003441NAC domain
SuperFamilySSF1019418.37E-2436151IPR003441NAC domain
PfamPF023651.1E-943144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MAEQPPADRD SGGSGGSNNN NNGKWKGKEK VVPEFGKNRH GMPVGFYFVP KDLELFAIFM  60
CKLVRGKVPG ALNNIFEHIR ILEFHPALLH DGGTWKASGG SKTVRSKKVG GIIVGQKLTM  120
VFYERRFEGD QNPVKTNWGM HEFTKIIPGT KNQSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1221441e-102AC122144.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0011L09, complete sequence.
GenBankAP0149661e-102AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.11e-72NAC transcription factor NAM-B2 isoform X1
TrEMBLA0A0E0EXE31e-110A0A0E0EXE3_9ORYZ; Uncharacterized protein
STRINGOMERI10G05870.11e-111(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.24e-08NAC 014