PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G06470.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 149aa    MW: 16718.3 Da    PI: 10.371
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G06470.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.35.5e-18351491108
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgkd 89 
                      +p+G+ F P+d el     +k v+g+   +l++v+++++i++++P  L+ + + +ee+  +yfFs+r+ +++  +++ ++r++k g+Wka+g +
  OMERI10G06470.2  35 MPVGCYFIPKDLELFAILRCKLVRGQLpGTLNNVFEHIRILEFHPALLHeTYIGNEEDgYIYFFSRRQFATKagNKRWPTRVAKGGTWKASGGS 128
                      699************77666666666544445679*************84455555553569**9998766633667899************** PP

              NAM  90 kevlsk..kgelvglkktLvf 108
                      k v sk  +g +vg k t+vf
  OMERI10G06470.2 129 KMVRSKkvGGIDVGQKLTMVF 149
                      ****99888889********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-2229149IPR003441NAC domain
PROSITE profilePS5100522.38735149IPR003441NAC domain
PfamPF023659.7E-836149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MAEQPPEGSG GGNNYGKWKG KEKVVPEYGK NRHGMPVGCY FIPKDLELFA ILRCKLVRGQ  60
LPGTLNNVFE HIRILEFHPA LLHETYIGNE EDGYIYFFSR RQFATKAGNK RWPTRVAKGG  120
TWKASGGSKM VRSKKVGGID VGQKLTMVF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0661072e-91AK066107.1 Oryza sativa Japonica Group cDNA clone:J013052A02, full insert sequence.
GenBankAK1067722e-91AK106772.1 Oryza sativa Japonica Group cDNA clone:002-115-G01, full insert sequence.
GenBankAP0033312e-91AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
GenBankAP0149572e-91AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126092e-91CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.13e-86NAC transcription factor NAM-B2 isoform X1
TrEMBLA0A0E0EXI71e-106A0A0E0EXI7_9ORYZ; Uncharacterized protein
STRINGOMERI10G06200.11e-105(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.11e-07NAC family protein