PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G07200.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 120aa    MW: 13285.2 Da    PI: 9.6601
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G07200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.79.2e-102188162
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvka..eek.ewyfFs 62
                     lp+GfrF P+d+el+ + L  k++g +    l+ v+++++i++++P +L      +     + + + +fF+
  OMERI10G07200.1 21 LPRGFRFVPQDQELL-DILDDKLRGAPldRALDAVFHDTRILDFHPAKLYGihrlS--IpgSLSlSSFFFF 88
                     799************.88*********53333456**************7334332..2222223334443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-111688IPR003441NAC domain
PROSITE profilePS510059.96421120IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MAAPGDGEEK KAGSRKNKHG LPRGFRFVPQ DQELLDILDD KLRGAPLDRA LDAVFHDTRI  60
LDFHPAKLYG IHRLSIPGSL SLSSFFFFSG DGLGALGDLI YIIHQSLHGI QHKSSQPIRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0276601e-131AC027660.2 Oryza sativa Japonica Group chromosome 10 clone BAC nbxb0045B21, complete sequence.
GenBankAP0149661e-131AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614522.12e-41uncharacterized protein LOC4348616
TrEMBLA0A0E0EXU12e-79A0A0E0EXU1_9ORYZ; Uncharacterized protein
STRINGOGLUM10G09660.19e-43(Oryza glumipatula)
STRINGOMERI10G06900.18e-43(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56620.15e-06NAC domain containing protein 99