PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G07220.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 244aa    MW: 26505 Da    PI: 9.5233
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G07220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.14.8e-25191541127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                      lp Gf F+Ptd+el+   L+ k  g++  +++++ +++++i++++P +L  k +k eek  +yfFskr+  ++++kr+ r+++ g W+++g   
  OMERI10G07220.1  19 LPIGFYFEPTDQELL-AILELKRLGRPlSRAHDAfFHDIRILDFHPAELYeKYAKDEEKgYIYFFSKREFPTSSKKRPLRVAEGGAWNSSGAVY 111
                      699************.6688888888844445556**************8345555555455*****************************965 PP

              NAM  91 evlsk....kgelvglkktLvfykg..rapkgektdWvmheyr 127
                      + +++    +g +vg kktLvf++    ++ ++kt+W ++e++
  OMERI10G07220.1 112 KAVKSnksgGGYDVGHKKTLVFHQRlpGDKVAVKTNWAIQEFT 154
                      5555436666667**********7533455668********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-3112173IPR003441NAC domain
PROSITE profilePS5100530.11119174IPR003441NAC domain
PfamPF023652.5E-1320154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAAPEDGEDG SFGKNKHGLP IGFYFEPTDQ ELLAILELKR LGRPLSRAHD AFFHDIRILD  60
FHPAELYEKY AKDEEKGYIY FFSKREFPTS SKKRPLRVAE GGAWNSSGAV YKAVKSNKSG  120
GGYDVGHKKT LVFHQRLPGD KVAVKTNWAI QEFTGIIGPQ NEVPDLAVYR LYKMRKEGRE  180
TPADLAADAA TAAAAMNNGG QQASAAAMAL PPPATGLPGG RMMSMADKAN MASTSKAYAT  240
SQSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2421580.0AK242158.1 Oryza sativa Japonica Group cDNA, clone: J075155G16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614025.11e-143spidroin-2
TrEMBLA0A0E0EXU31e-180A0A0E0EXU3_9ORYZ; Uncharacterized protein
STRINGONIVA10G09250.11e-144(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.15e-13NAC domain containing protein 25