PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G08380.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 245aa    MW: 27331.7 Da    PI: 5.0456
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G08380.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP77.51.2e-241791471
          E2F_TDP 14 lklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71
                     +k++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  OMERI10G08380.3  1 MKVCEKVESkGRTTYNEVADELVAEfadpnnnfaspdtdnpntpqfDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 79
                     589****999************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.77E-17180IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.8E-38185IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.2E-21179IPR003316E2F/DP family, winged-helix DNA-binding domain
PIRSFPIRSF0094041.8E-1071245IPR015648Transcription factor DP
SMARTSM013722.1E-27179IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144581.40E-3984187IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.48E-4186218No hitNo description
SMARTSM011383.1E-6986243IPR014889Transcription factor DP, C-terminal
PfamPF087818.5E-4087214IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MKVCEKVESK GRTTYNEVAD ELVAEFADPN NNFASPDTDN PNTPQFDEKN IRRRVYDALN  60
VLMAMDIISK DKKEIQWKGL PRTSMSDVEE LKTEIIGLKG RIDKKNAYLQ ELEDQFVGLQ  120
NLAQRNEQLY GSGNAPSGGV ALPFILVQTR PHATVEVEIS EDMQLVHFDF NSTPFELHDD  180
SFVLKALGFS GKEPDDTQAR VGNGGECSTT PIYHQSPQVA RPNGVRLPTS PPIPGILKGR  240
VKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B6e-321841793PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245510.0AY224551.1 Oryza sativa (japonica cultivar-group) isolate 26539 DP TF mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614876.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-110DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0E0EY970.0A0A0E0EY97_9ORYZ; Uncharacterized protein
STRINGOMERI10G08020.30.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-112Transcription factor DP