PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G08570.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 286aa    MW: 32314.3 Da    PI: 11.35
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G08570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.3e-07194241348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                       WT  E   lv++v ++G g+W+   r +     Rt  ++k++w+++l
  OMERI10G08570.1 194 HWTIKEVTNLVQGVSKHGVGRWTELKRDFFstSIRTSVHLKDKWRNLL 241
                      6****************************99989************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.53187245IPR017930Myb domain
SuperFamilySSF466898.97E-15189276IPR009057Homeodomain-like
SMARTSM007170.0016191243IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-10194242IPR009057Homeodomain-like
CDDcd116604.61E-19195242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MPFARVNTLS LSSSSPQVSL RRASLSPPPR LPLRSSGLLA NRSGGARVVK DRSRELCISW  60
AMEKAAAAAC GWRKGLEEGE PEWEAMELEA AAPAIFPADG GGGGGRRSPA AWRIYFNQHM  120
RMTSTICYKG PKMKQAWTND FIPKDGCKRG PRGARKRQTF PSRGARARRA FPLQQLCFGT  180
TRDKRCRLRK NNDHWTIKEV TNLVQGVSKH GVGRWTELKR DFFSTSIRTS VHLKDKWRNL  240
LKACGIDFTS TAKGNAQKTM LWPLDKRLIE QITQLAYKHP YPRQKY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0716450.0AK071645.1 Oryza sativa Japonica Group cDNA clone:J023105M22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613839.11e-117uncharacterized protein LOC4348738 isoform X2
TrEMBLA0A0E0EYD40.0A0A0E0EYD4_9ORYZ; Uncharacterized protein
STRINGORUFI10G12080.11e-167(Oryza rufipogon)
STRINGOBART10G11560.11e-167(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-16TRF-like 6