PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G08610.5
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 131aa    MW: 14978 Da    PI: 8.7624
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G08610.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.0004226571854
                     HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     +++  L++++ +      +K + a++L +A++YIk L
  OMERI10G08610.5 26 DKITALQQIVSPF-----GKTDTASVLYEAINYIKWL 57
                     7888899999887.....8***************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.772857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-102372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-82366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-42662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MAAVARHRTT TTEQYWSQVP KVKLGDKITA LQQIVSPFGK TDTASVLYEA INYIKWLHEQ  60
VQLLSDPYMK SSSSKDYNAW GGLDRKEKAD AEVDLRSRGL CLVPVSCTPQ VYRDNNGPDY  120
WTPPYRSCLY R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8361180.0CT836118.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122B23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658548.21e-80PREDICTED: uncharacterized protein LOC102714306
SwissprotQ9FYJ62e-44BH111_ARATH; Transcription factor bHLH111
TrEMBLA0A0E0EYE62e-93A0A0E0EYE6_9ORYZ; Uncharacterized protein
STRINGOS07T0471900-004e-80(Oryza sativa)
STRINGOB07G19980.13e-79(Oryza brachyantha)
STRINGORGLA07G0117600.13e-80(Oryza glaberrima)
STRINGOBART07G13960.15e-81(Oryza barthii)
STRINGLPERR07G11670.12e-80(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.14e-46bHLH family protein