PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G09300.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 529aa    MW: 57419 Da    PI: 7.5274
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G09300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.42.7e-206699134
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                     C++Cgtt+Tp+WR+gp+g++tLCnaCG++yr+ +
  OMERI10G09300.1 66 CRHCGTTETPQWRHGPEGHRTLCNACGMRYRSGK 99
                     *******************************976 PP
2GATA40.92.9e-13238271134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C++CgttkTp WR gpd  ++L naCG +yr+  
  OMERI10G09300.1 238 CAHCGTTKTPAWRLGPDSRRKLSNACGNKYRSGQ 271
                      *******************************976 PP
3GATA47.62.2e-15456490135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++CgttkTp W +gpd   +LCnaCG  yrk +l
  OMERI10G09300.1 456 CTHCGTTKTPAWLSGPDSRGKLCNACGKQYRKGRL 490
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.14E-1558121No hitNo description
PROSITE profilePS5011413.6796096IPR000679Zinc finger, GATA-type
SMARTSM004016.0E-1860114IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.2E-156498IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.58E-1565114No hitNo description
PfamPF003201.3E-176699IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-8231272No hitNo description
PROSITE profilePS5011410.844232268IPR000679Zinc finger, GATA-type
SMARTSM004019.1E-6232289IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.7E-11232287IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.59E-7237269No hitNo description
PfamPF003201.2E-11238271IPR000679Zinc finger, GATA-type
SMARTSM004010.15388434IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.814388407IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-4393407IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.62E-11449511No hitNo description
PROSITE profilePS5011410.093450486IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-8450504IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-10454488IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.34E-10455504No hitNo description
PfamPF003201.6E-13456490IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MVVVDGLHDG GGGDLQALLD DAGVDDVAAR GGGGEVEEEV ERPSNEDAFP AVEKMATAAA  60
AKGLQCRHCG TTETPQWRHG PEGHRTLCNA CGMRYRSGKL VPEYRPLRSP TFSPELHSNR  120
HHRVLQLRRR PGPQSAAPSP AAVARCGGEA KEEEEELAWV SNKDAFATVE TTMAPSPRVV  180
EIPPEHDHRP PNIPTTSPEP HSDRPRRVVQ LPRRLQEPSA SANLAHAVAA TARAGRECAH  240
CGTTKTPAWR LGPDSRRKLS NACGNKYRSG QLNSTTFSQN SQEQKKKSKS SVCSRERKRS  300
AVAATVVVGG GLRDDAAAIA DEHLDGGDLQ ALLDDVALDD VAARGGDDAG EAKEEEEELE  360
WLSNKDAFPT VETMSPAPPE NRTKAPVPPA GWQCRHCGST ETPLWRERDG PAEAEHVRKE  420
ETPPNITPAT KHRRIVDLLR CSTALNTAAT AVERRCTHCG TTKTPAWLSG PDSRGKLCNA  480
CGKQYRKGRL VPEYRPLNCP TFSPELHSNE HAHRRRRESP VAIAIAGEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0342580.0AC034258.10 Oryza sativa chromosome 10 BAC OSJNBb0011A08 genomic sequence, complete sequence.
GenBankAC0967810.0AC096781.6 Oryza sativa chromosome 10 BAC OSJNBa0013H08 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613898.10.0GATA-type transcription factor sreA
TrEMBLA0A0E0EYN10.0A0A0E0EYN1_9ORYZ; Uncharacterized protein
STRINGOMERI10G08950.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157091414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.13e-25GATA transcription factor 1