PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI10G11950.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

YABBY

Protein Properties

Length: 320aa MW: 33555.2 Da PI: 8.8229

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI10G11950.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	78.8	1.7e-24	53	107	4	58
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqlla 58 +s eq+Cyv+C +C+t+l+vsvPs+slfk+vtvrCGhC+sll+vn++ ++ OMERI10G11950.1 53 DSEQEQLCYVHCHYCDTVLVVSVPSSSLFKTVTVRCGHCSSLLTVNMRGLLLPTT 107 56789***************************************99987765444 PP
2	YABBY	128.6	8.4e-40	210	273	109	170
YABBY 109 vprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +pr+ ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl OMERI10G11950.1 210 SPRTNTalINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 273 455544448*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.2E-61	55	273	IPR006780	YABBY protein
SuperFamily	SSF47095	9.03E-8	215	266	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.9E-4	222	265	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MSSSSSSSAS SAAAAAFRPA VVQREQQAVE EKFPAAAAMR EMVVLPPVAA AADSEQEQLC 60 YVHCHYCDTV LVVSVPSSSL FKTVTVRCGH CSSLLTVNMR GLLLPTTAAA AAAAPPTPPL 120 PPTPPPPPAA AHFPHSLNLA PANPPHHHSL LDEISTANSP TTQLLLEQHG LGGLMASAAS 180 CRNNNSPAPP PPPPPPPATS QGKAAAKEPS PRTNTALINR PPEKRQRVPS AYNRFIKDEI 240 QRIKAGNPDI SHREAFSAAA KNWAHFPHIH FGLMPDHQGL KKTSLLPQDH QRKDGLLKEG 300 LYAAAAAAAA AAANMGVAPY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB274015	0.0	AB274015.1 Oryza sativa Japonica Group OsYABBY3 mRNA for OsYABBY3 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613818.1	1e-158	protein YABBY 3 isoform X1
Swissprot	Q8L556	1e-159	YAB3_ORYSJ; Protein YABBY 3
TrEMBL	A0A0E0EZR2	0.0	A0A0E0EZR2_9ORYZ; Uncharacterized protein
STRING	OMERI10G11930.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	3e-44	YABBY family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]