PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI10G12340.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 789aa MW: 82576.2 Da PI: 5.5882

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI10G12340.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	99.3	3.2e-31	95	179	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r++ lk+plWeevs+k++e+g++rs+k+Ckek+en++k+yk++ke++ +r ++ +t+++f+qlea OMERI10G12340.1 95 RWPRQETLALLKIRSDMDAAFRDATLKGPLWEEVSRKLAEEGYRRSAKKCKEKFENVHKYYKRTKESRAGR--NDGKTYRFFTQLEA 179 8******************************************************************97..56668*****85 PP
2	trihelix	111.2	6e-35	470	555	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+++++r++++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a OMERI10G12340.1 470 RWPKAEVHALIQLRSNLDNRYQEAGPKGPLWEEISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 555 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0034	92	154	IPR001005	SANT/Myb domain
Pfam	PF13837	2.7E-21	94	180	No hit	No description
PROSITE profile	PS50090	6.737	94	152	IPR017877	Myb-like domain
CDD	cd12203	7.85E-28	94	159	No hit	No description
SMART	SM00717	0.0087	467	529	IPR001005	SANT/Myb domain
Pfam	PF13837	8.3E-24	469	556	No hit	No description
PROSITE profile	PS50090	7.317	469	527	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.2E-4	469	526	IPR009057	Homeodomain-like
CDD	cd12203	2.22E-28	470	534	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010192	Biological Process	mucilage biosynthetic process
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence Send to blast
MQQQQQGGGG GGVQQQFGAV APEMSPFSPA GGGGGRISMA EAASPISSRP PPQQQFDELG 60 ASGGVGGGGG GFDAEALAAA AVGEEGASGG AGGNRWPRQE TLALLKIRSD MDAAFRDATL 120 KGPLWEEVSR KLAEEGYRRS AKKCKEKFEN VHKYYKRTKE SRAGRNDGKT YRFFTQLEAL 180 HGTAAGVAAP SPVTSLAPPP PTAVGVSAGV RAPAEPPPAV VMGNVMSFST SNTEEYSDEE 240 DSDDEGTEDM GGGGDERGKR KRLSEDGAAG GGGGGGGGGG SRKMMRFFEG LMKQVMERQE 300 AMQQRFLEAI EKREQDRMIR EEAWRRQEMA RLAREQEILA QERAMAASRD AAVVSFIQKI 360 TGQTIPMPPI IAAPAITVMP PPAPAPSQPP PPPSHPTPIT SVAPAPPPPP PPAAASHSQP 420 PQPSPQATKS PLPATPQTQS SMDIVMTAAE AHDAGYDGSG GGGGQPSSSR WPKAEVHALI 480 QLRSNLDNRY QEAGPKGPLW EEISAGMRRL GYSRSSKRCK EKWENINKYF KKVKESNKKR 540 PEDSKTCPYF HQLDALYRNK AALNSSSSSA AAAAAPALPP PEHAEPAAAA VTVAAPISQT 600 PPPPQPVTTT KNGNGTSSTN GANGEGGGGG SGGMQMQASN GSVVGGNKFF TGAAAAAAAA 660 KKPEYIMKEM MEQRPQQPPA ANNAFNRTDG GGGGGVDSDN MDEDDEDDYD DDDDDDDDDD 720 VDGNKMQYEI QFQHQHHHQQ QPQHRHQQSV VRPNAAASAA AGGNPPGTAA PATAAAATTT 780 TGSFLAMVQ

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence Send to blast

MQQQQQGGGG GGVQQQFGAV APEMSPFSPA GGGGGRISMA EAASPISSRP PPQQQFDELG  60
ASGGVGGGGG GFDAEALAAA AVGEEGASGG AGGNRWPRQE TLALLKIRSD MDAAFRDATL  120
KGPLWEEVSR KLAEEGYRRS AKKCKEKFEN VHKYYKRTKE SRAGRNDGKT YRFFTQLEAL  180
HGTAAGVAAP SPVTSLAPPP PTAVGVSAGV RAPAEPPPAV VMGNVMSFST SNTEEYSDEE  240
DSDDEGTEDM GGGGDERGKR KRLSEDGAAG GGGGGGGGGG SRKMMRFFEG LMKQVMERQE  300
AMQQRFLEAI EKREQDRMIR EEAWRRQEMA RLAREQEILA QERAMAASRD AAVVSFIQKI  360
TGQTIPMPPI IAAPAITVMP PPAPAPSQPP PPPSHPTPIT SVAPAPPPPP PPAAASHSQP  420
PQPSPQATKS PLPATPQTQS SMDIVMTAAE AHDAGYDGSG GGGGQPSSSR WPKAEVHALI  480
QLRSNLDNRY QEAGPKGPLW EEISAGMRRL GYSRSSKRCK EKWENINKYF KKVKESNKKR  540
PEDSKTCPYF HQLDALYRNK AALNSSSSSA AAAAAPALPP PEHAEPAAAA VTVAAPISQT  600
PPPPQPVTTT KNGNGTSSTN GANGEGGGGG SGGMQMQASN GSVVGGNKFF TGAAAAAAAA  660
KKPEYIMKEM MEQRPQQPPA ANNAFNRTDG GGGGGVDSDN MDEDDEDDYD DDDDDDDDDD  720
VDGNKMQYEI QFQHQHHHQQ QPQHRHQQSV VRPNAAASAA AGGNPPGTAA PATAAAATTT  780
TGSFLAMVQ

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00243	DAP	Transfer from AT1G76880	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC025296	0.0	AC025296.10 Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794483.1	0.0	trihelix transcription factor GTL1-like isoform X1
Refseq	XP_025794484.1	0.0	trihelix transcription factor GTL1-like isoform X1
TrEMBL	A0A0E0EZW7	0.0	A0A0E0EZW7_9ORYZ; Uncharacterized protein
STRING	OMERI10G12310.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-49	Trihelix family protein