PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G15290.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 883aa    MW: 94872.4 Da    PI: 5.8113
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G15290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.3e-20135190156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  OMERI10G15290.1 135 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 190
                      688999***********************************************998 PP
2START126.63e-403545852206
                      HHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS
            START   2 laeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv................dsgealrasgvvdmvlallveellddkeqW 72 
                      la +aa+ l ++  a+ep+Wv+ +       e           e ++                  + e  r+ +vv+m++ +lv  +ld + +W
  OMERI10G15290.1 354 LAATAADHLARMCRAGEPLWVRQRgaevmavE-----------EHARMfswpvdgakqgdggavARAEGTRDNAVVIMNSINLVDAFLDAN-KW 435
                      57889999****************66554333...........3333344444445567778888888888999*****************.** PP

                      -TT-S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--...-TTSEE-EESSE CS
            START  73 detla....kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe..sssvvRaellpS 150
                         ++    ka t++ i+ g        g+l lm+ae q+lsplv+ R++vf Ry+     +g+w+ivd   +  ++     ++svvR++++pS
  OMERI10G15290.1 436 MDLFPsivcKARTIQIINHGaasghlgsGTLLLMQAEVQFLSPLVAaREVVFFRYCVHnADEGSWAIVDFPAEGFEE--GllQASVVRCRRRPS 527
                      **********************************************************9999*******55555555..356************ PP

                      EEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 151 giliepksnghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206
                      g++i++++ng+s+v+wveh+++ g     + ++r  v sg+a+ga +w++ lqrqce+
  OMERI10G15290.1 528 GCIIQDMPNGYSRVVWVEHMEMVGEEKplQPVFRDYVASGAAFGATRWLSVLQRQCER 585
                      *********************98765449***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.1E-20119193IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-22122186IPR009057Homeodomain-like
PROSITE profilePS5007117.07132192IPR001356Homeobox domain
SMARTSM003891.1E-19133196IPR001356Homeobox domain
PfamPF000463.7E-18135190IPR001356Homeobox domain
CDDcd000867.01E-19135193No hitNo description
PROSITE patternPS000270167190IPR017970Homeobox, conserved site
PROSITE profilePS5084843.765344588IPR002913START domain
SuperFamilySSF559614.26E-28347587No hitNo description
CDDcd088751.36E-99348584No hitNo description
SMARTSM002345.6E-22353585IPR002913START domain
PfamPF018522.2E-32354585IPR002913START domain
Gene3DG3DSA:3.30.530.202.1E-4469551IPR023393START-like domain
SuperFamilySSF559611.92E-15610782No hitNo description
SuperFamilySSF559611.92E-15828867No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MRRMFGDCQV LSSMAAMAGA SSSADALFAS PLIPNPALAG FMSSSAAMPF HHFSNAAATL  60
IPKEEGLMGG LHVAKDEEMD LEMDMELSGG SGSAHLDGLL SFADVDEDHK PQHSGHDQPP  120
DAAQPSGAAG GNGKKKRYHR HTAHQIQQME ALFKECPHPD DKQRLKLSQE LGLKPRQVKF  180
WFQNRRTQMK AQQDRADNVI LRAENENLKS DNFRLQAAIR NVVCPNCGHA AVLADMSYEE  240
QQLRIENARL KDELDRLACI ATRYGGGGGG RQPVLSTSAL SCISAPPPVL MPPLDLDMNV  300
YSRHFAEQAP VMGCGDLIPP PVVPQQMAAD GSAAYMGAIM APMQEQDKQL VVDLAATAAD  360
HLARMCRAGE PLWVRQRGAE VMAVEEHARM FSWPVDGAKQ GDGGAVARAE GTRDNAVVIM  420
NSINLVDAFL DANKWMDLFP SIVCKARTIQ IINHGAASGH LGSGTLLLMQ AEVQFLSPLV  480
AAREVVFFRY CVHNADEGSW AIVDFPAEGF EEGLLQASVV RCRRRPSGCI IQDMPNGYSR  540
VVWVEHMEMV GEEKPLQPVF RDYVASGAAF GATRWLSVLQ RQCERLASEL ARNIADLGVI  600
RTPEARTNMM KLSQRMITTF CANISASGTQ SWTALSDSTQ DTIRVTTRKN TEPGQPSGVI  660
LTAVSTSWLP FTHQQVFELL ADEQQRCQLE ILSNGGSLHE VAHIANGSHP RNCISLLRIN  720
AASNSSQNVE LLLQESSTHP DGGSLVVFAT VDVDAIQVTM SGEDPSYIPL LPLGFAIFPA  780
TSPSPAAAPT ISSSTTTTTG NGNGETSSTP PRNSSSNNNN ADELLPPNGC LLTVGMQVLA  840
SAVPSAKLNL SSVTAINSHV CNAIHQITAA LKGSAGGEPA SDQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1016460.0AB101646.1 Oryza sativa Japonica Group Roc3 mRNA for GL2-type homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613461.10.0homeobox-leucine zipper protein ROC3
RefseqXP_025876369.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A0E0F1510.0A0A0E0F151_9ORYZ; Uncharacterized protein
STRINGOMERI10G15260.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78463441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7