PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G00350.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 550aa    MW: 60726.4 Da    PI: 7.3812
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G00350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.63.8e-26321375357
                      -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEE.ES--S CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitY.egeHn 57 
                      Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve +  d+++ ei   +g+H+
  OMERI11G00350.1 321 DGYSWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVEMTP-DGRIAEILEdSGTHT 375
                      9***************************************.999999974257775 PP
2WRKY993e-31413469360
                      -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve +  d+++ ei+Y+geHnh+k
  OMERI11G00350.1 413 DGYSWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVEMTP-DGRIAEIVYNGEHNHPK 469
                      9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF540011.63E-3911193No hitNo description
PROSITE profilePS5060013.71719184IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:3.30.310.1303.3E-684178No hitNo description
PfamPF029021.4E-591183IPR003653Ulp1 protease family, C-terminal catalytic domain
PROSITE profilePS5081119.875314374IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-21314368IPR003657WRKY domain
SuperFamilySSF1182901.57E-20316375IPR003657WRKY domain
SMARTSM007742.7E-25319376IPR003657WRKY domain
PfamPF031068.2E-19321367IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-27406470IPR003657WRKY domain
PROSITE profilePS5081123.72406470IPR003657WRKY domain
SuperFamilySSF1182901.96E-24408470IPR003657WRKY domain
SMARTSM007741.7E-34411469IPR003657WRKY domain
PfamPF031062.5E-24413468IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0019784Molecular FunctionNEDD8-specific protease activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MAHGGGEEEE ERVLSHGDVV LLRCDLTILR GPHFLNDRII AFYLAHLAAD HDADDDLLLL  60
PPSIPYLLSN LPDPASVAAV ADPLRLASRR LVLLPVNDNP DVSHAEGGSH WTLLVLDNSN  120
AVSGPRFVHH DSLPPTNLPA ARRLAAVLRP LLPASAIPLI EGPTPRQTNG YDCGVFVLAV  180
ARAICNWWLT RARHSDSDSD WLEAVKREPF NSTSFSSFDC IYQSLPVTAQ DFGTWCDMQS  240
HKKVAAVKPV ASRPSSRLRS FSMLQEDSTA IDSPRLEDSG THTTCDQKKA DTGKGACWDN  300
LTVSQSVRKP NVSAKNSLSY DGYSWRKYGQ KQVKGSEFPR SYYKCTHPTC PVKRKVEMTP  360
DGRIAEILED SGTHTTYDQK KADTGKGACW DNLTVSQSVR KPNVSAKNSL SYDGYSWRKY  420
GQKQVKGSEF PRSYYKCTHP TCPVKRKVEM TPDGRIAEIV YNGEHNHPKP HPPRKPTLST  480
SVETLVATND AGLENKLEGC DQAIGSDAVV EALRGGCHCL DGFRNGNEIS DCKKRYAYAV  540
IFIQEKDLAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2bkq_A3e-26131955185SENTRIN-SPECIFIC PROTEASE 8
2bkq_B3e-26131955185SENTRIN-SPECIFIC PROTEASE 8
2bkq_C3e-26131955185SENTRIN-SPECIFIC PROTEASE 8
2bkq_D3e-26131955185SENTRIN-SPECIFIC PROTEASE 8
2bkr_A3e-26131955185SENTRIN-SPECIFIC PROTEASE 8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617664.10.0uncharacterized protein LOC4349534
TrEMBLA0A0E0F1A70.0A0A0E0F1A7_9ORYZ; Uncharacterized protein
STRINGOMERI11G00340.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-30WRKY DNA-binding protein 58