PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G01500.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 254aa    MW: 28507.7 Da    PI: 8.7468
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G01500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY22.32.7e-074766221
                     --SS-EEEEEEE--TT-SS- CS
             WRKY  2 dDgynWrKYGqKevkgsefp 21
                     dDg++WrKYG K+  +s+fp
  OMERI11G01500.1 47 DDGHQWRKYGEKKLSNSNFP 66
                     8*****************99 PP
2WRKY34.63.7e-11891331959
                      SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
             WRKY  19 efprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                       + r YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H+++
  OMERI11G01500.1  89 FCKRFYYRCTYKndmKCPATKQVQQKdTNDPPMFSVTYFNHHTCN 133
                      56799******99999*******8761679*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-2234134IPR003657WRKY domain
SuperFamilySSF1182906.02E-73868IPR003657WRKY domain
PROSITE profilePS508119.48841135IPR003657WRKY domain
SMARTSM007747.0E-2746134IPR003657WRKY domain
PfamPF031065.3E-54766IPR003657WRKY domain
SuperFamilySSF1182901.15E-1088134IPR003657WRKY domain
PfamPF031061.8E-1390132IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MALDSVPSYP SDLGSSRATT TRTPQQQRVS PRKEERTWTT DTYAPYDDGH QWRKYGEKKL  60
SNSNFPSLWE ALHILFAHKS LLIVVVVSFC KRFYYRCTYK NDMKCPATKQ VQQKDTNDPP  120
MFSVTYFNHH TCNSSSKIVG STPDTAAQSS SRRAISICFN SHGTTSEQPT FLSSSASLLS  180
PSMQSYSSKQ QPDMNTYSRQ FQWADTSSST SNAPIKMEAD DYAEASASAS TTGALSRTLL  240
PIGQSRCIEY FHFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8320180.0CT832018.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105A09, full insert sequence.
GenBankCU4058750.0CU405875.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C005J02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616442.11e-143probable WRKY transcription factor 70 isoform X1
TrEMBLA0A0E0F1X10.0A0A0E0F1X1_9ORYZ; Uncharacterized protein
STRINGOMERI11G01510.11e-156(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-14WRKY DNA-binding protein 55