PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G02310.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 189aa    MW: 20278.6 Da    PI: 9.9199
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G02310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.8e-10157183430
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                       hn  ErrRRdriN+++  L+el+P++
  OMERI11G02310.1 157 VHNPSERRRRDRINDKLRALQELVPHC 183
                      699**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-9151185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.833153189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.95E-5156185No hitNo description
PfamPF000101.2E-7157183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-9157184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGLAQIEQRT NYRCKHACDR GKSTAKLAGA WREGGAATAA GGGGVRARRL LRFLRLLVPL  60
GRRGLSICGS NAVAAPALPA DDDDDDIDAA APREEEEEGT GAARAAGASS SGGSGSGSYP  120
LFKRGRDELV DSLSEFADET RPSKRPAAKR RTRAAEVHNP SERRRRDRIN DKLRALQELV  180
PHCNKLYDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148165KRRTRAAEVHNPSERRRR
2161166ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126141e-146CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0F2871e-131A0A0E0F287_9ORYZ; Uncharacterized protein
STRINGOPUNC07G02800.11e-40(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-06phytochrome interacting factor 3