PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G03710.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 525aa    MW: 59072.2 Da    PI: 6.4095
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G03710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.47e-27194290186
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                      +Wt+++v++Li+a+++++e+ +++           +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++++++d
  OMERI11G03710.1 194 KWTDSMVKLLITAVSYTGEDPGADLgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHSLLD 287
                      7*********************8744455667777**********************************************55*********** PP

         trihelix  84 qle 86 
                      +++
  OMERI11G03710.1 288 HMD 290
                      *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.4E-20192315No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MWAPWSVGPA CQRETSCSAR PNIEAEKEAE AEAEADCLLA GVQFSRRIPS LYSCASSCTP  60
VSILYGTNKK LKCLGDRFGE MEGSNPPGNM TQGPSYGSLD LHGISKQMHP PNSGNQGFNQ  120
PQIPGNFTIP MDRVTEPDNI SDGVQLGQHG KIAHHHHHHR HHSKNHGSDE EEHDMNEDAA  180
DGKDKKGSPW HRMKWTDSMV KLLITAVSYT GEDPGADLGG GRRNYSMMQK KGKWKAISKV  240
MGERGCHVSP QQCEDKFNDL NKRYKRLTDI LGRGTACNVV ENHSLLDHMD ISEKMKEDAR  300
KILNSKHLFY EEMCSYHNNN RISLPEDPAL QQSLQLALRC KEDNDFMRHA SGDAELDDDQ  360
SEDSDYEENE EEHRAVDTNI RGPSMHKRMW HVVDHGDVGF VTSCSNDGSG RSDPYDVLDI  420
NKPFPDGSDL ALVQKDLALK AAEIQKHRLQ IETKAVQLAK QRLKWEMFRK NKDLELEKLA  480
LENEQMMLQN KRLQINSIQD RGVLFLTMNA EVKSKCGGLA SQMAM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205330.0AC120533.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0081F16 map E50055S, complete sequence.
GenBankAK1011540.0AK101154.1 Oryza sativa Japonica Group cDNA clone:J033027D16, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615140.10.0uncharacterized protein LOC4349866 isoform X1
RefseqXP_015615141.10.0uncharacterized protein LOC4349866 isoform X1
TrEMBLA0A0E0F2W10.0A0A0E0F2W1_9ORYZ; Uncharacterized protein
STRINGOGLUM11G03790.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-88sequence-specific DNA binding transcription factors