PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI11G03850.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 432aa MW: 45255.9 Da PI: 9.0803

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI11G03850.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.4	1.3e-06	200	223	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++CpdC+++F +++L+ H +t H OMERI11G03850.1 200 FSCPDCDEVFVKPDSLELHRSTrH 223 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.349	200	228	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	202	223	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	6.81E-17	225	431	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.2E-11	227	430	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MEASAAKEKD KGGKKMSRVG SWGSMAFYSS SSSSSRNQPV SAAAAAAEGK NGGGGGVGKK 60 EKRRSSISRS ITCAGSICST KESSVSSRGR GRRRRSGGGG GGDGGSTSSR SLMGPEYHGD 120 SAAAVSASSS FNSVMTAATS ATAATTTTSS SATSPPSALS SPLSSIVGGS FRAMQIRKLS 180 GCYLHCHSVL DPRTLAAVVF SCPDCDEVFV KPDSLELHRS TRHAVSELGA DDTSRNIVEI 240 IFQSSWLKKN APVCKIERIL KVQSSDKTIK RFEQHKEAVK EKARSAGDEA GRNPRCVADG 300 NELLRFHCTA FSCSLGLAGG TALCCASSSP PPLHCKLCSI IKDGFRVDCN GRIATMATSG 360 RAHDTAEVLP DGEKRAMLVC RVVAGRVKKL SSSNSSEDHD CDSVSPYSDL DELFVFSPRA 420 ILPCFVVIYS GY

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MEASAAKEKD KGGKKMSRVG SWGSMAFYSS SSSSSRNQPV SAAAAAAEGK NGGGGGVGKK  60
EKRRSSISRS ITCAGSICST KESSVSSRGR GRRRRSGGGG GGDGGSTSSR SLMGPEYHGD  120
SAAAVSASSS FNSVMTAATS ATAATTTTSS SATSPPSALS SPLSSIVGGS FRAMQIRKLS  180
GCYLHCHSVL DPRTLAAVVF SCPDCDEVFV KPDSLELHRS TRHAVSELGA DDTSRNIVEI  240
IFQSSWLKKN APVCKIERIL KVQSSDKTIK RFEQHKEAVK EKARSAGDEA GRNPRCVADG  300
NELLRFHCTA FSCSLGLAGG TALCCASSSP PPLHCKLCSI IKDGFRVDCN GRIATMATSG  360
RAHDTAEVLP DGEKRAMLVC RVVAGRVKKL SSSNSSEDHD CDSVSPYSDL DELFVFSPRA  420
ILPCFVVIYS GY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK110948	0.0	AK110948.1 Oryza sativa Japonica Group cDNA clone:002-173-H08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616600.1	0.0	uncharacterized protein LOC4349886
TrEMBL	A0A0E0F2X9	0.0	A0A0E0F2X9_9ORYZ; Uncharacterized protein
STRING	ORGLA11G0041200.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-75	C2H2-like zinc finger protein