PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G04690.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 381aa    MW: 43199.9 Da    PI: 9.9013
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G04690.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.54.5e-1722981698
                     EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3 16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     + +p +f  ++ ++++++  +++l d+sg++W+ +l  +  s+++++  GWkeFv++n ++ g f+vF++d+rs+f   v+vf+
  OMERI11G04690.2 22 VKIPSSFN-QClQNQPTG--MVSLVDRSGNKWSAEL--TSDSEGFFFVHGWKEFVRDNSIQCGQFLVFTYDKRSQF--SVTVFE 98
                     57999997.554666655..8***************..*********************************99999..888876 PP
2B352.59.2e-17275366398
                      EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++++ s+v     + +p +f++e+   ++++k +tl d++g+ Wev++ y   ++   +++GW +F+  n+L+  D++vF+l+++++   +v++
  OMERI11G04690.2 275 QIMMESYVYVGFFMNIPCEFVRECL--PRTNKRITLWDPQGKAWEVNYVYYSDRSVGSFSGGWGKFAVGNNLEKFDVCVFELVQKDN--IKVHI 364
                      6789999999**************5..345678***************995555556799*********************998444..57887 PP

                      E- CS
               B3  97 fr 98 
                      +r
  OMERI11G04690.2 365 YR 366
                      76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.0437100IPR003340B3 DNA binding domain
SMARTSM010194.7E-716100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.5E-1921100IPR015300DNA-binding pseudobarrel domain
PfamPF023624.1E-152297IPR003340B3 DNA binding domain
SuperFamilySSF1019363.01E-2022104IPR015300DNA-binding pseudobarrel domain
CDDcd100176.35E-152497No hitNo description
Gene3DG3DSA:2.40.330.108.1E-26265366IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-25266366IPR015300DNA-binding pseudobarrel domain
CDDcd100177.36E-24271366No hitNo description
PROSITE profilePS5086313.352273368IPR003340B3 DNA binding domain
SMARTSM010195.0E-15273368IPR003340B3 DNA binding domain
PfamPF023626.4E-15275366IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MERHRNREAA RSRREEERVV MVKIPSSFNQ CLQNQPTGMV SLVDRSGNKW SAELTSDSEG  60
FFFVHGWKEF VRDNSIQCGQ FLVFTYDKRS QFSVTVFEPS GIDKISTFSA HLSKNVIIKT  120
ESDEGGMVTA AITTEKMAPA LKENNGITGK RTRDVDYLME DRVVVFKKSS EANVCESSRR  180
KRAGASAGKS KVTSTSHNST RGSSCSSDED NSSSKSPNPP FLMRFLSGEV SRRGVSKGQR  240
QLTVISQRRP VTEAEKDHAL QRAREFKSKN PFAVQIMMES YVYVGFFMNI PCEFVRECLP  300
RTNKRITLWD PQGKAWEVNY VYYSDRSVGS FSGGWGKFAV GNNLEKFDVC VFELVQKDNI  360
KVHIYRVVPE ITPHKLRSDP K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1324636722142B3 domain-containing transcription factor VRN1
4i1k_B2e-1324636722142B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1019410.0AK101941.1 Oryza sativa Japonica Group cDNA clone:J033074I03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615373.10.0B3 domain-containing protein Os11g0197600
SwissprotQ2R9D20.0Y1176_ORYSJ; B3 domain-containing protein Os11g0197600
TrEMBLA0A0E0F3910.0A0A0E0F391_9ORYZ; Uncharacterized protein
STRINGOMERI11G04630.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-19B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]