PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI11G08010.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 682aa MW: 75179.7 Da PI: 6.0518

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI11G08010.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	54.8	1.9e-17	571	599	24	52
RWP-RK 24 eLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ++c+T+LKriCRq+GI+RWP+Rkik++ OMERI11G08010.1 571 DTKICPTTLKRICRQHGISRWPSRKIKKV 599 557************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.979	535	619	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-14	573	599	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence Send to blast
MDGGGKPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQQRLLHV 60 STAAGSSSRQ DDANVSITEE GTTTRTRSDR AAGLASGEPV AAGIGSVPKP FDGVTLTERM 120 LRALAMLKEA SGGEAILVQV WMPVRNGEQH VLTTSDQPFL LDQKLRGYRE VSRQFTFSAE 180 EGPGLFPGMP GRVFMSGMPE WTSNVMYYHG SEYLRVDYAR RHEVRGSLAM PVFNSSGGSC 240 CAVLEVVMTR EKDNFCLEMV DVSNALQGNL DQFAYLDQLE VLGQSGRQAE FLVLYITHKH 300 KPPPIIQLPR TSWNLETGQS IQSQISPIES YSRDQKLALM EIFDVLQAVC QAHLLPLALA 360 WIPVCSKRDV LVSVEYGAKF GKRNKEVLCI EESACYVNDT RMRDFVQVCA EHPLEKGQGV 420 TGNAYLSNNP FFSSDVKDSD MHAYPLVNHA RKFGLHAAVA IRLRSTYTKN DDYVLEFFLP 480 VLCKGGEEQQ LLLDSISATM RKVCKSLRTV SDAELKEDVT RKPSNENRSG TRCPSPVNLI 540 YSGREIDVPN ETKTNTPLEY QIGSIDEQLA DTKICPTTLK RICRQHGISR WPSRKIKKVN 600 RSLKKIQNVI SSVHGVEGVL KYDPSTGCLI SSVSPSIEPE CLEILDTTRL HILKLQVQDV 660 VCPIGSSSER CGFGSTVIDL FL

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence Send to blast

MDGGGKPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQQRLLHV  60
STAAGSSSRQ DDANVSITEE GTTTRTRSDR AAGLASGEPV AAGIGSVPKP FDGVTLTERM  120
LRALAMLKEA SGGEAILVQV WMPVRNGEQH VLTTSDQPFL LDQKLRGYRE VSRQFTFSAE  180
EGPGLFPGMP GRVFMSGMPE WTSNVMYYHG SEYLRVDYAR RHEVRGSLAM PVFNSSGGSC  240
CAVLEVVMTR EKDNFCLEMV DVSNALQGNL DQFAYLDQLE VLGQSGRQAE FLVLYITHKH  300
KPPPIIQLPR TSWNLETGQS IQSQISPIES YSRDQKLALM EIFDVLQAVC QAHLLPLALA  360
WIPVCSKRDV LVSVEYGAKF GKRNKEVLCI EESACYVNDT RMRDFVQVCA EHPLEKGQGV  420
TGNAYLSNNP FFSSDVKDSD MHAYPLVNHA RKFGLHAAVA IRLRSTYTKN DDYVLEFFLP  480
VLCKGGEEQQ LLLDSISATM RKVCKSLRTV SDAELKEDVT RKPSNENRSG TRCPSPVNLI  540
YSGREIDVPN ETKTNTPLEY QIGSIDEQLA DTKICPTTLK RICRQHGISR WPSRKIKKVN  600
RSLKKIQNVI SSVHGVEGVL KYDPSTGCLI SSVSPSIEPE CLEILDTTRL HILKLQVQDV  660
VCPIGSSSER CGFGSTVIDL FL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012619	0.0	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616882.1	0.0	protein NLP2-like isoform X2
TrEMBL	A0A0E0F4I2	0.0	A0A0E0F4I2_9ORYZ; Uncharacterized protein
STRING	OGLUM11G08660.3	0.0	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-152	Nin-like family protein